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Aliases for MIR4672 Gene

Subcategory (RNA class) for MIR4672 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR4672 Gene

  • MicroRNA 4672 2 3 5
  • Hsa-Mir-4672 3

External Ids for MIR4672 Gene

Previous GeneCards Identifiers for MIR4672 Gene

  • GC09U901727
  • GC09M130636

Summaries for MIR4672 Gene

Entrez Gene Summary for MIR4672 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR4672 Gene

MIR4672 (MicroRNA 4672) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR4672 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR4672 Gene

Genomics for MIR4672 Gene

Regulatory Elements for MIR4672 Gene

Enhancers for MIR4672 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09H127864 1.5 Ensembl ENCODE dbSUPER 0.7 +4.1 4072 1 HDGF ZNF133 GLI4 ZNF48 ZNF2 ZNF121 ZNF766 GATA2 ZNF207 ZNF143 LOC102723566 FPGS NAIF1 ST6GALNAC6 RPL12 GOLGA2 ODF2 TTC16 PTRH1 URM1
GH09H127869 1.2 Ensembl ENCODE 0.7 -0.5 -532 1 HDAC1 RB1 SREBF2 ARID4B RAD21 RARA RFX5 ZNF143 ZNF207 RCOR1 ST6GALNAC6 LOC102723566 FPGS ST6GALNAC4 PIP5KL1 PTRH1 TTC16 MIR4672 AK1
GH09H127860 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +7.6 7577 3 HDGF PKNOX1 ATF1 MLX ARNT TCF12 ZNF121 ZNF766 GATA2 ELK1 NAIF1 ZNF79 ODF2 GLE1 SNORA65 ST6GALNAC6 LOC102723566 FPGS PTRH1 TTC16
GH09H127857 1.3 Ensembl ENCODE dbSUPER 0.4 +11.1 11055 2 BCOR FOXA2 NFIB ZMYM3 FEZF1 BCL11B GLIS2 ZNF316 LCORL POLR2A ST6GALNAC6 LOC102723566 FPGS AK1 ENG MIR4672
GH09H127873 1.2 ENCODE dbSUPER 0.4 -6.5 -6467 5 PKNOX1 ARID4B GLIS2 ZNF143 ATF7 SP3 ZNF592 GLIS1 MXD3 MYNN CIZ1 AK1 GOLGA2 ZNF79 SLC25A25-AS1 MIR4672
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR4672 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR4672 Gene

Chromosome:
9
Start:
127,869,415 bp from pter
End:
127,869,495 bp from pter
Size:
81 bases
Orientation:
Minus strand

Genomic View for MIR4672 Gene

Genes around MIR4672 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR4672 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR4672 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR4672 Gene

ORGUL Member Location for MIR4672 Gene

ORGUL Member Location for MIR4672 gene

Proteins for MIR4672 Gene

Post-translational modifications for MIR4672 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR4672 Gene

Domains & Families for MIR4672 Gene

Gene Families for MIR4672 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR4672: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR4672 Gene

Function for MIR4672 Gene

Phenotypes From GWAS Catalog for MIR4672 Gene

Animal Model Products

CRISPR Products

miRNA Products

Clone Products

  • Applied Biological Materials Clones for MIR4672
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR4672 Gene

Localization for MIR4672 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR4672 Gene

Pathways & Interactions for MIR4672 Gene

SuperPathways for MIR4672 Gene

No Data Available

Interacting Proteins for MIR4672 Gene

Gene Ontology (GO) - Biological Process for MIR4672 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR4672 Gene

Drugs & Compounds for MIR4672 Gene

No Compound Related Data Available

Transcripts for MIR4672 Gene

mRNA/cDNA for MIR4672 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

miRNA Products

Clone Products

  • Applied Biological Materials Clones for MIR4672
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for MIR4672 Gene

No ASD Table

Relevant External Links for MIR4672 Gene

GeneLoc Exon Structure for
MIR4672
ECgene alternative splicing isoforms for
MIR4672

Expression for MIR4672 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR4672 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR4672 Gene:

MIR4672
genes like me logo Genes that share expression patterns with MIR4672: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR4672 Gene

Orthologs for MIR4672 Gene

Evolution for MIR4672 Gene

ENSEMBL:
Gene Tree for MIR4672 (if available)
TreeFam:
Gene Tree for MIR4672 (if available)

No data available for Orthologs for MIR4672 Gene

Paralogs for MIR4672 Gene

No data available for Paralogs for MIR4672 Gene

Variants for MIR4672 Gene

Sequence variations from dbSNP and Humsavar for MIR4672 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1001476472 -- 127,871,411(+) CTGTT(A/C)CCTGC intron-variant, upstream-variant-2KB
rs1001741099 -- 127,871,433(+) TTATA(-/G)GGGAG intron-variant, upstream-variant-2KB
rs1002389587 -- 127,870,568(+) TATGT(A/G)TGAGC intron-variant, upstream-variant-2KB
rs1002903404 -- 127,870,074(+) CCTGG(-/CGC)CGCCC intron-variant, upstream-variant-2KB
rs1003708781 -- 127,870,515(+) ACTCT(A/G)TTTTC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR4672 Gene

Variant ID Type Subtype PubMed ID
esv28616 CNV gain+loss 19812545
esv3576708 CNV gain 25503493
esv3621795 CNV gain 21293372

Relevant External Links for MIR4672 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR4672

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR4672 Gene

Disorders for MIR4672 Gene

Relevant External Links for MIR4672

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR4672

No disorders were found for MIR4672 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR4672 Gene

Publications for MIR4672 Gene

  1. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H … Rovira C (Cancer research 2011) 3 60
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 60

Products for MIR4672 Gene

Sources for MIR4672 Gene

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