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Aliases for MIR4642 Gene

Subcategory (RNA class) for MIR4642 Gene


Quality Score for this RNA gene is


Aliases for MIR4642 Gene

  • MicroRNA 4642 2 3 5
  • Hsa-Mir-4642 3

External Ids for MIR4642 Gene

Previous GeneCards Identifiers for MIR4642 Gene

  • GC06U902216
  • GC06P044405

Summaries for MIR4642 Gene

Entrez Gene Summary for MIR4642 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR4642 Gene

MIR4642 (MicroRNA 4642) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR4642 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR4642 Gene

Genomics for MIR4642 Gene

Regulatory Elements for MIR4642 Gene

Enhancers for MIR4642 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H044446 0.9 ENCODE 0.4 +11.5 11505 1 PKNOX1 FOXA2 INSM2 ZNF76 FEZF1 ZEB1 YY1 ZNF366 ZSCAN5C FOS SUPT3H GC06P044450 MIR4642
GH06H044439 0.5 ENCODE 0.7 +4.3 4258 0 FOSL1 FOS ZNF592 MIR4642 GC06P044450
GH06H044428 0.4 ENCODE 0.4 -6.8 -6783 0 ZNF362 GC06P044423 GC06P044424 MIR4642
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR4642 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR4642 Gene

44,435,641 bp from pter
44,435,722 bp from pter
82 bases
Plus strand

Genomic View for MIR4642 Gene

Genes around MIR4642 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR4642 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR4642 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR4642 Gene

Proteins for MIR4642 Gene

Post-translational modifications for MIR4642 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR4642 Gene

Domains & Families for MIR4642 Gene

Gene Families for MIR4642 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR4642: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR4642 Gene

Function for MIR4642 Gene

Animal Model Products

CRISPR Products

miRNA Products

Clone Products

  • Applied Biological Materials Clones for MIR4642
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR4642 Gene

Localization for MIR4642 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR4642 Gene

Pathways & Interactions for MIR4642 Gene

SuperPathways for MIR4642 Gene

No Data Available

Interacting Proteins for MIR4642 Gene

Gene Ontology (GO) - Biological Process for MIR4642 Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR4642 Gene

Drugs & Compounds for MIR4642 Gene

No Compound Related Data Available

Transcripts for MIR4642 Gene

mRNA/cDNA for MIR4642 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

miRNA Products

Clone Products

  • Applied Biological Materials Clones for MIR4642
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for MIR4642 Gene

No ASD Table

Relevant External Links for MIR4642 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR4642 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR4642 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR4642 Gene:

genes like me logo Genes that share expression patterns with MIR4642: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR4642 Gene

Orthologs for MIR4642 Gene

Evolution for MIR4642 Gene

Gene Tree for MIR4642 (if available)
Gene Tree for MIR4642 (if available)

No data available for Orthologs for MIR4642 Gene

Paralogs for MIR4642 Gene

No data available for Paralogs for MIR4642 Gene

Variants for MIR4642 Gene

Sequence variations from dbSNP and Humsavar for MIR4642 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000897768 -- 44,435,928(+) AGGTG(C/T)CTGCC intron-variant, downstream-variant-500B
rs1001285646 -- 44,435,805(+) GAGAT(A/G)GAATT intron-variant, downstream-variant-500B
rs1002402830 -- 44,436,183(+) TTCTC(C/T)TCCCA intron-variant, downstream-variant-500B
rs1002405738 -- 44,436,029(+) CACCT(C/T)GGCCT intron-variant, downstream-variant-500B
rs1002744331 -- 44,434,710(+) AAGAC(A/G)GTATT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR4642 Gene

Variant ID Type Subtype PubMed ID
nsv1019145 CNV gain 25217958
nsv517370 CNV gain+loss 19592680

Relevant External Links for MIR4642 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR4642 Gene

Disorders for MIR4642 Gene

Relevant External Links for MIR4642

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MIR4642 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR4642 Gene

Publications for MIR4642 Gene

  1. A genome-wide association study identifies susceptibility loci for ossification of the posterior longitudinal ligament of the spine. (PMID: 25064007) Nakajima M … Ikegawa S (Nature genetics 2014) 3 60
  2. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H … Rovira C (Cancer research 2011) 3 60
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 60

Products for MIR4642 Gene

Sources for MIR4642 Gene

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