Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MIR4534 Gene

Subcategory (RNA class) for MIR4534 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR4534 Gene

  • MicroRNA 4534 2 3 5
  • Hsa-Mir-4534 3

External Ids for MIR4534 Gene

Previous GeneCards Identifiers for MIR4534 Gene

  • GC22U900804
  • GC22P038387
  • GC22P037990
  • GC22P037951

Summaries for MIR4534 Gene

Entrez Gene Summary for MIR4534 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR4534 Gene

MIR4534 (MicroRNA 4534) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR4534 Gene

Genomics for MIR4534 Gene

Regulatory Elements for MIR4534 Gene

Enhancers for MIR4534 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22G037993 1.7 VISTA ENCODE dbSUPER 0.4 +8.3 8322 7.8 PKNOX1 FEZF1 ZNF2 TCF12 GLIS2 FOS KLF7 ZNF263 TBX21 SMARCB1 SLC16A8 GALR3 TRIOBP BAIAP2L2 KDELR3 MIR4534 GC22P038026
GH22G038015 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +28.7 28655 2.9 HDAC1 HDGF ZBTB40 RAD21 ZNF48 RARA EGR1 SCRT2 ZNF143 EGR2 SOX10 GC22P038026 MIR4534
GH22G037988 0.7 dbSUPER 0.7 +1.0 1000 2.9 ZNF362 MTA2 NR2F1 TRIM22 TBX21 ZBTB40 RFX5 ARID3A IKZF1 RELB GALR3 EIF3L H1F0 MIR4534 GC22P038026
GH22G037992 0.5 dbSUPER 0.7 +4.1 4147 0.5 ZNF316 EMSY PRDM1 MIR4534 GC22P038026
GH22G038012 1.1 ENCODE dbSUPER 0.3 +24.1 24146 1.5 ELF3 PKNOX1 FOXA2 ARID4B RARA GATA4 ZNF366 CREM KLF11 SP5 BAIAP2L2 GC22P038026 MIR4534
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR4534 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR4534 Gene

Chromosome:
22
Start:
37,988,794 bp from pter
End:
37,988,853 bp from pter
Size:
60 bases
Orientation:
Plus strand

Genomic View for MIR4534 Gene

Genes around MIR4534 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR4534 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR4534 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR4534 Gene

Proteins for MIR4534 Gene

Post-translational modifications for MIR4534 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR4534 Gene

Domains & Families for MIR4534 Gene

Gene Families for MIR4534 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR4534: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR4534 Gene

Function for MIR4534 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR4534 Gene

Localization for MIR4534 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR4534 Gene

Pathways & Interactions for MIR4534 Gene

SuperPathways for MIR4534 Gene

No Data Available

Interacting Proteins for MIR4534 Gene

Gene Ontology (GO) - Biological Process for MIR4534 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR4534 Gene

Drugs & Compounds for MIR4534 Gene

No Compound Related Data Available

Transcripts for MIR4534 Gene

mRNA/cDNA for MIR4534 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR4534 Gene

No ASD Table

Relevant External Links for MIR4534 Gene

GeneLoc Exon Structure for
MIR4534
ECgene alternative splicing isoforms for
MIR4534

Expression for MIR4534 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR4534 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR4534 Gene:

MIR4534
genes like me logo Genes that share expression patterns with MIR4534: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR4534 Gene

Orthologs for MIR4534 Gene

Evolution for MIR4534 Gene

ENSEMBL:
Gene Tree for MIR4534 (if available)
TreeFam:
Gene Tree for MIR4534 (if available)

No data available for Orthologs for MIR4534 Gene

Paralogs for MIR4534 Gene

No data available for Paralogs for MIR4534 Gene

Variants for MIR4534 Gene

Sequence variations from dbSNP and Humsavar for MIR4534 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1002491814 -- 37,988,966(+) TGGTC(A/G)AGGGC intron-variant, downstream-variant-500B
rs1003046178 -- 37,988,682(+) AAAAA(A/C)ATACT intron-variant, upstream-variant-2KB
rs1003916898 -- 37,987,818(+) TGTGT(A/G)CCCTC intron-variant, upstream-variant-2KB
rs1008733908 -- 37,987,845(+) TGCGG(A/G)GGCCT intron-variant, upstream-variant-2KB
rs1010000302 -- 37,988,653(+) CTCAT(A/G)AAAAC intron-variant, upstream-variant-2KB

Relevant External Links for MIR4534 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR4534

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR4534 Gene

Disorders for MIR4534 Gene

Relevant External Links for MIR4534

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR4534

No disorders were found for MIR4534 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR4534 Gene

Publications for MIR4534 Gene

  1. Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs. (PMID: 20733160) Jima D.D. … Dave S.S. (Blood 2010) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR4534 Gene

Sources for MIR4534 Gene

Content
Loading form....