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Aliases for MIR4500HG Gene

Subcategory (RNA class) for MIR4500HG Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR4500HG Gene

  • MIR4500 Host Gene 2 3
  • MIR4500 Host Gene (Non-Protein Coding) 2 3
  • HCG1818123 3

External Ids for MIR4500HG Gene

Previous GeneCards Identifiers for MIR4500HG Gene

  • GC13M088098

Summaries for MIR4500HG Gene

GeneCards Summary for MIR4500HG Gene

MIR4500HG (MIR4500 Host Gene) is an RNA Gene, and is affiliated with the miRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR4500HG Gene

Genomics for MIR4500HG Gene

Genomic Location for MIR4500HG Gene

Start:
87,427,214 bp from pter
End:
87,671,259 bp from pter
Size:
244,046 bases
Orientation:
Minus strand

Genomic View for MIR4500HG Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIR4500HG Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR4500HG Gene

No data available for Regulatory Elements for MIR4500HG Gene

Proteins for MIR4500HG Gene

Post-translational modifications for MIR4500HG Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR4500HG Gene

Domains for MIR4500HG Gene

Gene Families for MIR4500HG Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR4500HG: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR4500HG Gene

Function for MIR4500HG Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MIR4500HG Gene

Localization for MIR4500HG Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR4500HG Gene

Pathways for MIR4500HG Gene

SuperPathways for MIR4500HG Gene

No Data Available

Interacting Proteins for MIR4500HG Gene

Gene Ontology (GO) - Biological Process for MIR4500HG Gene

None

No data available for Pathways by source for MIR4500HG Gene

Transcripts for MIR4500HG Gene

mRNA/cDNA for MIR4500HG Gene

(2) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MIR4500HG Gene

MIR4500 host gene (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MIR4500HG Gene

No ASD Table

Relevant External Links for MIR4500HG Gene

GeneLoc Exon Structure for
MIR4500HG
ECgene alternative splicing isoforms for
MIR4500HG

Expression for MIR4500HG Gene

mRNA expression in normal human tissues for MIR4500HG Gene

mRNA differential expression in normal tissues according to GTEx for MIR4500HG Gene

This gene is overexpressed in Brain - Anterior cingulate cortex (BA24) (10.5), Brain - Frontal Cortex (BA9) (8.2), Brain - Hippocampus (5.3), Brain - Cortex (5.2), and Brain - Amygdala (4.1).

SOURCE GeneReport for Unigene cluster for MIR4500HG Gene Hs.508337

genes like me logo Genes that share expressions with MIR4500HG: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for MIR4500HG Gene

Orthologs for MIR4500HG Gene

Evolution for MIR4500HG Gene

ENSEMBL:
Gene Tree for MIR4500HG (if available)
TreeFam:
Gene Tree for MIR4500HG (if available)

No data available for Orthologs for MIR4500HG Gene

Paralogs for MIR4500HG Gene

No data available for Paralogs for MIR4500HG Gene

Variants for MIR4500HG Gene

Sequence variations from dbSNP and Humsavar for MIR4500HG Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type MAF
rs1292 -- 87,444,155(+) GGCTC(C/T)TTAAA nc-transcript-variant
rs915241 -- 87,630,127(-) CTTGA(C/T)GGCAT intron-variant
rs950982 -- 87,578,833(+) ATTCA(A/G)CTGTC intron-variant
rs954383 -- 87,642,076(+) TAAAT(G/T)GTATG intron-variant
rs954384 -- 87,642,241(+) GCAAG(A/C)TGTGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MIR4500HG Gene

Variant ID Type Subtype PubMed ID
nsv832672 CNV Loss 17160897
dgv1745n71 CNV Loss 21882294
nsv818985 CNV Loss 17921354
dgv581e1 CNV Complex 17122850
nsv519480 CNV Loss 19592680
esv1565763 CNV Insertion 17803354

Relevant External Links for MIR4500HG Gene

HapMap Linkage Disequilibrium report
MIR4500HG

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MIR4500HG Gene

Disorders for MIR4500HG Gene

No disorders were found for MIR4500HG Gene.

No data available for UniProtKB/Swiss-Prot for MIR4500HG Gene

Publications for MIR4500HG Gene

  1. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3
  2. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington J.J. … Ducar M. (Nat. Biotechnol. 2001) 3
  3. An evaluation of the assembly of an approximately 15-Mb region on human chromosome 13q32-q33 linked to bipolar disorder and schizophrenia. (PMID: 11991713) Christian S.L. … Gershon E.S. (Genomics 2002) 3

Products for MIR4500HG Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate MIR4500HG
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for MIR4500HG
    • Block miRNA regulation of MIR4500HG using miScript Target Protectors

    Sources for MIR4500HG Gene

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