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Aliases for MIR4500HG Gene

Subcategory (RNA class) for MIR4500HG Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR4500HG Gene

  • MIR4500 Host Gene 2 3 5
  • MIR4500 Host Gene (Non-Protein Coding) 2 3
  • HCG1818123 3

External Ids for MIR4500HG Gene

Previous GeneCards Identifiers for MIR4500HG Gene

  • GC13M088098

Summaries for MIR4500HG Gene

GeneCards Summary for MIR4500HG Gene

MIR4500HG (MIR4500 Host Gene) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR4500HG Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR4500HG Gene

Genomics for MIR4500HG Gene

GeneHancer (GH) Regulatory Elements for MIR4500HG Gene

Promoters and enhancers for MIR4500HG Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I087670 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 550.8 -0.9 -887 3 PKNOX1 ZSCAN4 SIN3A ZNF48 RAD21 RFX5 YY1 GLIS2 ELK1 ZNF366 MIR4500HG SLITRK5 NUDT21P1
GH13I087673 Enhancer 0.5 ENCODE 0.8 -2.7 -2742 0.2 MXI1 POLR2A L3MBTL2 ZNF547 ZSCAN4 EZH2 MIR4500HG SLITRK5 NUDT21P1
GH13I087674 Enhancer 0.5 ENCODE 0.8 -2.4 -2447 0 MXI1 POLR2A L3MBTL2 EZH2 MIR4500HG SLITRK5 NUDT21P1
GH13I087676 Enhancer 0.7 Ensembl ENCODE 0.4 -6.0 -5975 1.9 L3MBTL2 MAX MNT EZH2 MIR4500HG SLITRK5 NUDT21P1
GH13I087730 Enhancer 0.3 FANTOM5 0.2 -59.7 -59706 0.1 NUDT21P1 MIR4500HG
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR4500HG on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR4500HG Gene

Genomic Locations for MIR4500HG Gene
chr13:87,427,214-87,671,259
(GRCh38/hg38)
Size:
244,046 bases
Orientation:
Minus strand
chr13:88,079,469-88,323,514
(GRCh37/hg19)

Genomic View for MIR4500HG Gene

Genes around MIR4500HG on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR4500HG Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR4500HG Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR4500HG Gene

Proteins for MIR4500HG Gene

Post-translational modifications for MIR4500HG Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR4500HG Gene

Domains & Families for MIR4500HG Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR4500HG Gene

Function for MIR4500HG Gene

Phenotypes From GWAS Catalog for MIR4500HG Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR4500HG Gene

Localization for MIR4500HG Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR4500HG Gene

Pathways & Interactions for MIR4500HG Gene

SuperPathways for MIR4500HG Gene

No Data Available

Interacting Proteins for MIR4500HG Gene

Gene Ontology (GO) - Biological Process for MIR4500HG Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR4500HG Gene

Drugs & Compounds for MIR4500HG Gene

No Compound Related Data Available

Transcripts for MIR4500HG Gene

mRNA/cDNA for MIR4500HG Gene

(2) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MIR4500HG Gene

MIR4500 host gene (non-protein coding):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR4500HG Gene

No ASD Table

Relevant External Links for MIR4500HG Gene

GeneLoc Exon Structure for
MIR4500HG
ECgene alternative splicing isoforms for
MIR4500HG

Expression for MIR4500HG Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR4500HG Gene

mRNA differential expression in normal tissues according to GTEx for MIR4500HG Gene

This gene is overexpressed in Brain - Anterior cingulate cortex (BA24) (x10.5), Brain - Frontal Cortex (BA9) (x8.2), Brain - Hippocampus (x5.3), Brain - Cortex (x5.2), and Brain - Amygdala (x4.1).

NURSA nuclear receptor signaling pathways regulating expression of MIR4500HG Gene:

MIR4500HG

SOURCE GeneReport for Unigene cluster for MIR4500HG Gene:

Hs.508337
genes like me logo Genes that share expression patterns with MIR4500HG: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR4500HG Gene

Orthologs for MIR4500HG Gene

Evolution for MIR4500HG Gene

ENSEMBL:
Gene Tree for MIR4500HG (if available)
TreeFam:
Gene Tree for MIR4500HG (if available)

No data available for Orthologs for MIR4500HG Gene

Paralogs for MIR4500HG Gene

No data available for Paralogs for MIR4500HG Gene

Variants for MIR4500HG Gene

Sequence variations from dbSNP and Humsavar for MIR4500HG Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000008409 -- 87,544,135(-) A/C/G intron_variant
rs1000011726 -- 87,613,666(-) G/T intron_variant
rs1000028043 -- 87,656,392(-) C/T intron_variant
rs1000031659 -- 87,580,435(-) T/A intron_variant
rs1000034821 -- 87,459,923(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR4500HG Gene

Variant ID Type Subtype PubMed ID
dgv1724n100 CNV gain 25217958
dgv1725n100 CNV loss 25217958
esv1565763 CNV insertion 17803354
esv2759956 CNV loss 17122850
esv3580797 CNV loss 25503493
esv3633039 CNV loss 21293372
esv3633047 CNV gain 21293372
esv3633048 CNV loss 21293372
esv3633049 CNV gain 21293372
nsv1043448 CNV loss 25217958
nsv1044071 CNV loss 25217958
nsv1044185 CNV loss 25217958
nsv1142836 CNV tandem duplication 24896259
nsv478953 CNV novel sequence insertion 20440878
nsv519480 CNV loss 19592680
nsv562629 CNV gain 21841781
nsv562630 CNV loss 21841781
nsv818985 CNV loss 17921354
nsv832672 CNV loss 17160897
nsv957448 CNV deletion 24416366

Additional Variant Information for MIR4500HG Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR4500HG

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR4500HG Gene

Disorders for MIR4500HG Gene

Additional Disease Information for MIR4500HG

No disorders were found for MIR4500HG Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR4500HG Gene

Publications for MIR4500HG Gene

  1. An evaluation of the assembly of an approximately 15-Mb region on human chromosome 13q32-q33 linked to bipolar disorder and schizophrenia. (PMID: 11991713) Christian SL … Gershon ES (Genomics 2002) 3 58
  2. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58
  3. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington JJ … Ducar M (Nature biotechnology 2001) 3 58

Products for MIR4500HG Gene

Sources for MIR4500HG Gene

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