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Aliases for MIR4500HG Gene

Subcategory (RNA class) for MIR4500HG Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR4500HG Gene

  • MIR4500 Host Gene 2 3 5
  • MIR4500 Host Gene (Non-Protein Coding) 2 3
  • HCG1818123 3

External Ids for MIR4500HG Gene

Previous GeneCards Identifiers for MIR4500HG Gene

  • GC13M088098

Summaries for MIR4500HG Gene

GeneCards Summary for MIR4500HG Gene

MIR4500HG (MIR4500 Host Gene) is an RNA Gene, and is affiliated with the miRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR4500HG Gene

Genomics for MIR4500HG Gene

Regulatory Elements for MIR4500HG Gene

Enhancers for MIR4500HG Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F087672 0.8 ENCODE 0.8 -1.6 -1605 1.5 ZNF223 ZNF384 ZIC2 HIC1 ZFHX2 GLIS2 ZNF366 PRDM10 EGR2 EZH2 MIR4500HG NUDT21P1
GH13F087673 0.5 ENCODE 0.8 -2.7 -2742 0.2 L3MBTL2 ZNF547 CBX2 EZH2 MIR4500HG NUDT21P1
GH13F087674 0.5 ENCODE 0.8 -2.4 -2448 0.0 RNF2 L3MBTL2 CBX2 EZH2 MIR4500HG NUDT21P1
GH13F087676 0.8 Ensembl ENCODE 0.4 -6.2 -6175 2.3 RNF2 L3MBTL2 MAX CBX2 MNT EZH2 MIR4500HG NUDT21P1
GH13F087732 0.3 FANTOM5 0.2 -61.2 -61226 0.3 NUDT21P1 MIR4500HG
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR4500HG on UCSC Golden Path with GeneCards custom track

Promoters for MIR4500HG Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000518564 -1042 2999 TBP PKNOX1 SIN3A ZNF48 RAD21 RFX5 GLIS2 ELK1 ZNF366 SCRT2

Genomic Location for MIR4500HG Gene

Chromosome:
13
Start:
87,427,214 bp from pter
End:
87,671,259 bp from pter
Size:
244,046 bases
Orientation:
Minus strand

Genomic View for MIR4500HG Gene

Genes around MIR4500HG on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR4500HG Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR4500HG Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR4500HG Gene

Proteins for MIR4500HG Gene

Post-translational modifications for MIR4500HG Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR4500HG Gene

Domains & Families for MIR4500HG Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR4500HG Gene

Function for MIR4500HG Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR4500HG Gene

Localization for MIR4500HG Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR4500HG Gene

Pathways & Interactions for MIR4500HG Gene

SuperPathways for MIR4500HG Gene

No Data Available

Interacting Proteins for MIR4500HG Gene

Gene Ontology (GO) - Biological Process for MIR4500HG Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR4500HG Gene

Transcripts for MIR4500HG Gene

mRNA/cDNA for MIR4500HG Gene

(2) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MIR4500HG Gene

MIR4500 host gene (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MIR4500HG Gene

No ASD Table

Relevant External Links for MIR4500HG Gene

GeneLoc Exon Structure for
MIR4500HG
ECgene alternative splicing isoforms for
MIR4500HG

Expression for MIR4500HG Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR4500HG Gene

mRNA differential expression in normal tissues according to GTEx for MIR4500HG Gene

This gene is overexpressed in Brain - Anterior cingulate cortex (BA24) (x10.5), Brain - Frontal Cortex (BA9) (x8.2), Brain - Hippocampus (x5.3), Brain - Cortex (x5.2), and Brain - Amygdala (x4.1).

NURSA nuclear receptor signaling pathways regulating expression of MIR4500HG Gene:

MIR4500HG

SOURCE GeneReport for Unigene cluster for MIR4500HG Gene:

Hs.508337
genes like me logo Genes that share expression patterns with MIR4500HG: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR4500HG Gene

Orthologs for MIR4500HG Gene

Evolution for MIR4500HG Gene

ENSEMBL:
Gene Tree for MIR4500HG (if available)
TreeFam:
Gene Tree for MIR4500HG (if available)

No data available for Orthologs for MIR4500HG Gene

Paralogs for MIR4500HG Gene

No data available for Paralogs for MIR4500HG Gene

Variants for MIR4500HG Gene

Sequence variations from dbSNP and Humsavar for MIR4500HG Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs10009602 -- 87,605,515(-) acata(C/T)ggcta intron-variant
rs10009610 -- 87,605,496(-) cccag(C/T)accat intron-variant
rs10009615 -- 87,605,486(-) tttat(A/T)aaata intron-variant
rs10017220 -- 87,605,705(-) ttttg(G/T)ctttt intron-variant
rs10017328 -- 87,605,564(-) aatta(A/G)ttttt intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MIR4500HG Gene

Variant ID Type Subtype PubMed ID
nsv562629 CNV gain 21841781
nsv562630 CNV loss 21841781
nsv818985 CNV loss 17921354
nsv832672 CNV loss 17160897
nsv957448 CNV deletion 24416366
nsv519480 CNV loss 19592680
nsv478953 CNV novel sequence insertion 20440878
nsv1142836 CNV tandem duplication 24896259
nsv1044185 CNV loss 25217958
nsv1044071 CNV loss 25217958
nsv1043448 CNV loss 25217958
esv3633049 CNV gain 21293372
esv3633048 CNV loss 21293372
esv3633047 CNV gain 21293372
esv3633039 CNV loss 21293372
esv3580797 CNV loss 25503493
esv2759956 CNV loss 17122850
esv1565763 CNV insertion 17803354
dgv1725n100 CNV loss 25217958
dgv1724n100 CNV gain 25217958

Relevant External Links for MIR4500HG Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR4500HG

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR4500HG Gene

Disorders for MIR4500HG Gene

Relevant External Links for MIR4500HG

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR4500HG

No disorders were found for MIR4500HG Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR4500HG Gene

Publications for MIR4500HG Gene

  1. An evaluation of the assembly of an approximately 15-Mb region on human chromosome 13q32-q33 linked to bipolar disorder and schizophrenia. (PMID: 11991713) Christian S.L. … Gershon E.S. (Genomics 2002) 3 64
  2. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3 64
  3. Creation of genome-wide protein expression libraries using random activation of gene expression. (PMID: 11329013) Harrington J.J. … Ducar M. (Nat. Biotechnol. 2001) 3 64

Products for MIR4500HG Gene

Sources for MIR4500HG Gene

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