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Aliases for MIR4472-2 Gene

Subcategory (RNA class) for MIR4472-2 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR4472-2 Gene

  • MicroRNA 4472-2 2 3 5
  • Hsa-Mir-4472-2 3

External Ids for MIR4472-2 Gene

Previous GeneCards Identifiers for MIR4472-2 Gene

  • GC12U901600
  • GC12M116867

Summaries for MIR4472-2 Gene

Entrez Gene Summary for MIR4472-2 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR4472-2 Gene

MIR4472-2 (MicroRNA 4472-2) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR4472-2 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR4472-2 Gene

Genomics for MIR4472-2 Gene

GeneHancer (GH) Regulatory Elements for MIR4472-2 Gene

Promoters and enhancers for MIR4472-2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I116425 Enhancer 1.3 Ensembl ENCODE dbSUPER 550.8 +0.9 944 4.1 NEUROD1 SIN3A TCF12 ZNF121 ZNF766 GATA2 FOS REST ZNF592 SMARCA4 MIR4472-2 PIR48425
GH12I116422 Enhancer 0.9 Ensembl ENCODE dbSUPER 0.8 +5.0 4997 1.1 SMARCE1 RFX1 POLR2A CHD4 FOS RAD21 PIR48425 MIR4472-2
GH12I116431 Enhancer 0.8 ENCODE dbSUPER 0.8 -3.6 -3596 1.6 BCOR CEBPB ZMYM3 MNT CEBPG TEAD3 CBX1 GATA3 HDAC2 RBAK FBXW8 MIR4472-2 LOC105370007
GH12I116433 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -7.0 -6970 4.4 PKNOX1 CLOCK FOXA2 NEUROD1 SIN3A DMAP1 ETS1 YY1 ELK1 KLF7 LINC00173 MIR4472-2 LOC105370007
GH12I116443 Enhancer 1.2 FANTOM5 Ensembl ENCODE 0.4 -15.9 -15860 1.2 HDAC1 MEIS2 PKNOX1 ATF1 ZFHX2 ZNF766 ZNF316 POLR2A EGR1 PRDM10 MAP1LC3B2 MED13L MIR4472-2 LOC105370007
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR4472-2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR4472-2 Gene

Genomic Locations for MIR4472-2 Gene
chr12:116,428,252-116,428,318
(GRCh38/hg38)
Size:
67 bases
Orientation:
Minus strand
chr12:116,866,057-116,866,123
(GRCh37/hg19)

Genomic View for MIR4472-2 Gene

Genes around MIR4472-2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR4472-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR4472-2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR4472-2 Gene

ORGUL Member Location for MIR4472-2 Gene

ORGUL Member Location for MIR4472-2 gene

Proteins for MIR4472-2 Gene

Post-translational modifications for MIR4472-2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR4472-2 Gene

Domains & Families for MIR4472-2 Gene

Gene Families for MIR4472-2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR4472-2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR4472-2 Gene

Function for MIR4472-2 Gene

Phenotypes From GWAS Catalog for MIR4472-2 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR4472-2 Gene

Localization for MIR4472-2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR4472-2 Gene

Pathways & Interactions for MIR4472-2 Gene

SuperPathways for MIR4472-2 Gene

No Data Available

Interacting Proteins for MIR4472-2 Gene

Gene Ontology (GO) - Biological Process for MIR4472-2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR4472-2 Gene

Drugs & Compounds for MIR4472-2 Gene

No Compound Related Data Available

Transcripts for MIR4472-2 Gene

mRNA/cDNA for MIR4472-2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR4472-2 Gene

No ASD Table

Relevant External Links for MIR4472-2 Gene

GeneLoc Exon Structure for
MIR4472-2
ECgene alternative splicing isoforms for
MIR4472-2

Expression for MIR4472-2 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR4472-2 Gene

Orthologs for MIR4472-2 Gene

Evolution for MIR4472-2 Gene

ENSEMBL:
Gene Tree for MIR4472-2 (if available)
TreeFam:
Gene Tree for MIR4472-2 (if available)

No data available for Orthologs for MIR4472-2 Gene

Paralogs for MIR4472-2 Gene

No data available for Paralogs for MIR4472-2 Gene

Variants for MIR4472-2 Gene

Sequence variations from dbSNP and Humsavar for MIR4472-2 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000018663 -- 116,429,222(-) C/G/T upstream_transcript_variant
rs1001084558 -- 116,429,051(-) A/T upstream_transcript_variant
rs1006221260 -- 116,428,073(-) A/G downstream_transcript_variant
rs1006320968 -- 116,428,960(-) C/G upstream_transcript_variant
rs1006580291 -- 116,429,441(-) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR4472-2 Gene

Variant ID Type Subtype PubMed ID
esv3630848 CNV gain 21293372
esv3630849 CNV loss 21293372
nsv973993 CNV duplication 23825009

Additional Variant Information for MIR4472-2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR4472-2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR4472-2 Gene

Disorders for MIR4472-2 Gene

Additional Disease Information for MIR4472-2

No disorders were found for MIR4472-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR4472-2 Gene

Publications for MIR4472-2 Gene

  1. Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs. (PMID: 20733160) Jima DD … Hematologic Malignancies Research Consortium (Blood 2010) 3 58
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR4472-2 Gene

Sources for MIR4472-2 Gene

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