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Aliases for MIR4472-1 Gene

Subcategory (RNA class) for MIR4472-1 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR4472-1 Gene

  • MicroRNA 4472-1 2 3
  • Hsa-Mir-4472-1 3

External Ids for MIR4472-1 Gene

Summaries for MIR4472-1 Gene

Entrez Gene Summary for MIR4472-1 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR4472-1 Gene

MIR4472-1 (MicroRNA 4472-1) is a RNA Gene, and belongs to miRNA RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR4472-1 Gene

Genomics for MIR4472-1 Gene

Genomic Location for MIR4472-1 Gene

Start:
142,176,339 bp from pter
End:
142,176,418 bp from pter
Size:
80 bases
Orientation:
Plus strand

Genomic View for MIR4472-1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIR4472-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR4472-1 Gene

No data available for Regulatory Elements for MIR4472-1 Gene

Proteins for MIR4472-1 Gene

Post-translational modifications for MIR4472-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR4472-1 Gene

Domains for MIR4472-1 Gene

Gene Families for MIR4472-1 Gene

HGNC:
  • MIR :ncRNAs / Micro RNAs
genes like me logo Genes that share domains with MIR4472-1: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for MIR4472-1 Gene

Function for MIR4472-1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MIR4472-1 Gene

Localization for MIR4472-1 Gene

No data available for Gene Ontology (GO) - Cellular Components for MIR4472-1 Gene

Pathways for MIR4472-1 Gene

SuperPathways for MIR4472-1 Gene

No Data Available

Interacting Proteins for MIR4472-1 Gene

Gene Ontology (GO) - Biological Process for MIR4472-1 Gene

None

No data available for Pathways by source for MIR4472-1 Gene

Transcripts for MIR4472-1 Gene

mRNA/cDNA for MIR4472-1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR4472-1 Gene

No ASD Table

Relevant External Links for MIR4472-1 Gene

GeneLoc Exon Structure for
MIR4472-1
ECgene alternative splicing isoforms for
MIR4472-1

Expression for MIR4472-1 Gene

mRNA expression in normal human tissues for MIR4472-1 Gene

genes like me logo Genes that share expressions with MIR4472-1: view

Orthologs for MIR4472-1 Gene

Evolution for MIR4472-1 Gene

ENSEMBL:
Gene Tree for MIR4472-1 (if available)
TreeFam:
Gene Tree for MIR4472-1 (if available)

No data available for Orthologs for MIR4472-1 Gene

Paralogs for MIR4472-1 Gene

No data available for Paralogs for MIR4472-1 Gene

Variants for MIR4472-1 Gene

Sequence variations from dbSNP and Humsavar for MIR4472-1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs7007430 -- 142,176,434(+) GAGTT(C/G)GTTTA downstream-variant-500B
rs7817648 -- 142,175,338(+) AGGAC(A/G)GAGAG upstream-variant-2KB
rs7831744 -- 142,175,334(+) TCTCA(C/G)GACAG upstream-variant-2KB
rs7845817 -- 142,175,752(+) AAGGG(C/T)GCCGG upstream-variant-2KB
rs7846108 -- 142,175,956(+) AGAGC(C/T)GCCAA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR4472-1 Gene

Variant ID Type Subtype PubMed ID
dgv7908n71 CNV Loss 21882294
nsv891604 CNV Loss 21882294
dgv7909n71 CNV Loss 21882294
nsv891611 CNV Loss 21882294

Relevant External Links for MIR4472-1 Gene

HapMap Linkage Disequilibrium report
MIR4472-1

Disorders for MIR4472-1 Gene

No disorders were found for MIR4472-1 Gene.

No data available for UniProtKB/Swiss-Prot for MIR4472-1 Gene

Publications for MIR4472-1 Gene

  1. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3
  2. Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs. (PMID: 20733160) Jima D.D. … Dave S.S. (Blood 2010) 3

Products for MIR4472-1 Gene

Sources for MIR4472-1 Gene

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