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Aliases for MIR4435-2HG Gene

Subcategory (RNA class) for MIR4435-2HG Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR4435-2HG Gene

  • MIR4435-2 Host Gene 2 3 5
  • LncRNA Associated With Poor Prognosis Of HCC 2 3
  • Long Intergenic Non-Protein Coding RNA 978 2 3
  • Adipogenesis Down-Regulated Transcript 2 2 3
  • MIR4435-1 Host Gene (Non-Protein Coding) 2 3
  • MIR4435-1 Host Gene 2
  • LncRNA-AWPPH 3
  • MIR4435-1HG 3
  • LINC00978 3
  • AK001796 3
  • AGD2 3

External Ids for MIR4435-2HG Gene

Previous HGNC Symbols for MIR4435-2HG Gene

  • MIR4435-1HG

Summaries for MIR4435-2HG Gene

GeneCards Summary for MIR4435-2HG Gene

MIR4435-2HG (MIR4435-2 Host Gene) is an RNA Gene, and is affiliated with the miRNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR4435-2HG Gene

Genomics for MIR4435-2HG Gene

Regulatory Elements for MIR4435-2HG Gene

Enhancers for MIR4435-2HG Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02G111493 1.7 FANTOM5 ENCODE dbSUPER 5.4 -0.7 -713 4.8 HDGF FOXA2 PKNOX1 CREB3L1 ARNT MLX ZFP64 ARID4B SIN3A DMAP1 ANAPC1 LOC105373559 MIR4435-2HG MERTK BCL2L11 PIR35996
GH02G111478 1.2 Ensembl ENCODE dbSUPER 6.6 +14.8 14815 3.4 SCRT1 CTCF KLF1 ZIC2 ATF2 ZNF121 ZFP69B ZFHX2 ZNF692 GLIS1 MIR4435-2HG EEF1E1P1 LOC105373557 ENSG00000280878
GH02G111624 1.5 FANTOM5 Ensembl ENCODE 5 -130.4 -130404 2.6 PKNOX1 ATF1 ARNT YY1 TCF12 GATA2 FOS JUNB MBD2 SMARCA4 MIR4435-2HG LOC105373559 RPL34P8
GH02G111658 1.6 FANTOM5 Ensembl ENCODE 4.3 -166.4 -166356 6.0 PKNOX1 ATF1 FOXA2 ARID4B DMAP1 YY1 TCF12 ZNF766 ELK1 GATA2 MIR4435-2HG RPL34P8 LOC105373559
GH02G111396 0.5 dbSUPER 4.3 +97.4 97410 2.3 EGR1 CREB1 HNF4A LOC100420892 MIR4435-2HG GC02P113171 GC02P113176
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR4435-2HG on UCSC Golden Path with GeneCards custom track

Promoters for MIR4435-2HG Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000121793 815 1801 HDAC1 ELF3 FOXA2 ARNT NFRKB ARID4B ZNF76 SIN3A FEZF1 ZNF366

Genomic Location for MIR4435-2HG Gene

Chromosome:
2
Start:
111,196,350 bp from pter
End:
111,495,115 bp from pter
Size:
298,766 bases
Orientation:
Minus strand

Genomic View for MIR4435-2HG Gene

Genes around MIR4435-2HG on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR4435-2HG Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR4435-2HG Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR4435-2HG Gene

Proteins for MIR4435-2HG Gene

Post-translational modifications for MIR4435-2HG Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR4435-2HG Gene

Domains & Families for MIR4435-2HG Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR4435-2HG Gene

Function for MIR4435-2HG Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR4435-2HG Gene

Localization for MIR4435-2HG Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR4435-2HG Gene

Pathways & Interactions for MIR4435-2HG Gene

SuperPathways for MIR4435-2HG Gene

No Data Available

Interacting Proteins for MIR4435-2HG Gene

Gene Ontology (GO) - Biological Process for MIR4435-2HG Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR4435-2HG Gene

Drugs & Compounds for MIR4435-2HG Gene

No Compound Related Data Available

Transcripts for MIR4435-2HG Gene

mRNA/cDNA for MIR4435-2HG Gene

(20) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR4435-2HG Gene

No ASD Table

Relevant External Links for MIR4435-2HG Gene

GeneLoc Exon Structure for
MIR4435-2HG
ECgene alternative splicing isoforms for
MIR4435-2HG

Expression for MIR4435-2HG Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR4435-2HG Gene

Orthologs for MIR4435-2HG Gene

Evolution for MIR4435-2HG Gene

ENSEMBL:
Gene Tree for MIR4435-2HG (if available)
TreeFam:
Gene Tree for MIR4435-2HG (if available)

No data available for Orthologs for MIR4435-2HG Gene

Paralogs for MIR4435-2HG Gene

No data available for Paralogs for MIR4435-2HG Gene

Variants for MIR4435-2HG Gene

Sequence variations from dbSNP and Humsavar for MIR4435-2HG Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1000000056 -- 111,423,466(+) GTCAA(C/T)TTCCA intron-variant
rs1000044643 -- 111,257,217(+) TTCTC(C/G)TGTTT intron-variant
rs1000059661 -- 111,482,138(+) GGGAT(C/G)GGTGT intron-variant
rs1000089378 -- 111,322,172(+) GCATG(G/T)CCCTC intron-variant, upstream-variant-2KB
rs1000099360 -- 111,200,074(+) AGGAA(A/C)TGGCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MIR4435-2HG Gene

Variant ID Type Subtype PubMed ID
dgv1995n106 CNV duplication 24896259
dgv4047n100 CNV loss 25217958
dgv4049n100 CNV gain 25217958
dgv4050n100 CNV gain 25217958
dgv4051n100 CNV gain 25217958
dgv4052n100 CNV gain 25217958
dgv731e214 CNV gain 21293372
esv26325 CNV gain+loss 19812545
esv2720518 CNV deletion 23290073
esv2759083 CNV gain+loss 17122850
esv32858 CNV loss 17666407
esv3347759 CNV duplication 20981092
esv3584012 CNV loss 25503493
esv3591985 CNV loss 21293372
esv3591986 CNV gain 21293372
esv3591987 CNV gain 21293372
esv3893082 CNV gain 25118596
nsv1001733 CNV gain+loss 25217958
nsv10126 CNV gain+loss 18304495
nsv1014545 CNV gain 25217958
nsv1076491 CNV duplication 25765185
nsv1077889 CNV duplication 25765185
nsv1147924 CNV duplication 26484159
nsv1149522 OTHER inversion 26484159
nsv2878 CNV insertion 18451855
nsv428402 CNV loss 18775914
nsv441774 CNV gain 18776908
nsv469744 CNV gain 16826518
nsv521956 CNV loss 19592680
nsv522475 CNV gain 19592680
nsv582699 CNV loss 21841781
nsv582700 CNV loss 21841781
nsv818077 CNV gain 17921354
nsv821628 CNV gain 15273396
nsv834332 CNV gain+loss 17160897
nsv953797 CNV duplication 24416366
nsv961868 CNV duplication 23825009
nsv998690 CNV gain 25217958

Relevant External Links for MIR4435-2HG Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR4435-2HG

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR4435-2HG Gene

Disorders for MIR4435-2HG Gene

Relevant External Links for MIR4435-2HG

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR4435-2HG

No disorders were found for MIR4435-2HG Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR4435-2HG Gene

Publications for MIR4435-2HG Gene

  1. The long non-coding RNA Morrbid regulates Bim and short-lived myeloid cell lifespan. (PMID: 27525555) Kotzin J.J. … Henao-Mejia J. (Nature 2016) 2 3 64
  2. A novel long noncoding RNA AK001796 acts as an oncogene and is involved in cell growth inhibition by resveratrol in lung cancer. (PMID: 25888808) Yang Q. … Jiang Y. (Toxicol. Appl. Pharmacol. 2015) 2 3 64
  3. Transcripts of unknown function in multiple-signaling pathways involved in human stem cell differentiation. (PMID: 19531736) Kikuchi K. … Aizawa Y. (Nucleic Acids Res. 2009) 2 3 64
  4. Human gingiva transcriptome during wound healing. (PMID: 28005267) Wang Y. … Tatakis D.N. (J. Clin. Periodontol. 2017) 3 64
  5. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3 64

Products for MIR4435-2HG Gene

Sources for MIR4435-2HG Gene

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