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Aliases for MIR4313 Gene

Subcategory (RNA class) for MIR4313 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for MIR4313 Gene

  • MicroRNA 4313 2 3 5
  • Hsa-Mir-4313 3

External Ids for MIR4313 Gene

ORGUL Members for MIR4313 Gene

Previous GeneCards Identifiers for MIR4313 Gene

  • GC15U901261
  • GC15M076054

Summaries for MIR4313 Gene

Entrez Gene Summary for MIR4313 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR4313 Gene

MIR4313 (MicroRNA 4313) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR4313 Gene

Genomics for MIR4313 Gene

Regulatory Elements for MIR4313 Gene

Enhancers for MIR4313 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F075757 0.5 ENCODE 14.5 +3.7 3716 1.7 ARNT CREB3L1 MLX ZFP64 SIN3A DMAP1 ZNF2 YY1 ZNF207 ZNF263 MIR4313 DNM1P35 CSPG4 GC15P075748
GH15F075759 0.2 ENCODE 14.5 +2.5 2533 0.1 MIR4313 GC15P075748
GH15F075731 1.2 Ensembl ENCODE 13.9 +30.0 30033 2.4 KLF17 NFXL1 GLI4 ZBTB40 RAD21 ZNF121 ZNF143 DEK EGR2 ZNF263 MIR4313 DNM1P35 MIR631 GC15M075735 ODF3L1
GH15F075737 0.2 ENCODE 13.8 +23.7 23671 1.5 ATF1 CREB3L1 SIN3A ZNF2 YY1 ZNF121 GLIS2 ZNF416 KLF7 ZNF202 ENSG00000260274 MIR4313 FBXO22 DNM1P35 SNUPN MAN2C1 LOC101929408
GH15F075722 0.5 Ensembl ENCODE 13.7 +38.6 38643 2.6 HDGF ATF1 ZNF76 KLF17 BMI1 BRCA1 RFX5 GLIS2 FOS CREM MIR4313 MIR631 ODF3L1 GC15P075718
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MIR4313 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR4313 Gene

Chromosome:
15
Start:
75,759,501 bp from pter
End:
75,762,405 bp from pter
Size:
2,905 bases
Orientation:
Minus strand

Genomic View for MIR4313 Gene

Genes around MIR4313 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR4313 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR4313 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR4313 Gene

Proteins for MIR4313 Gene

Post-translational modifications for MIR4313 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR4313 Gene

Domains & Families for MIR4313 Gene

Gene Families for MIR4313 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR4313: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR4313 Gene

Function for MIR4313 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR4313 Gene

Localization for MIR4313 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR4313 Gene

Pathways & Interactions for MIR4313 Gene

SuperPathways for MIR4313 Gene

No Data Available

Interacting Proteins for MIR4313 Gene

Gene Ontology (GO) - Biological Process for MIR4313 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR4313 Gene

Transcripts for MIR4313 Gene

mRNA/cDNA for MIR4313 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR4313 Gene

No ASD Table

Relevant External Links for MIR4313 Gene

GeneLoc Exon Structure for
MIR4313
ECgene alternative splicing isoforms for
MIR4313

Expression for MIR4313 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR4313 Gene

mRNA differential expression in normal tissues according to GTEx for MIR4313 Gene

This gene is overexpressed in Testis (x17.7).

NURSA nuclear receptor signaling pathways regulating expression of MIR4313 Gene:

MIR4313
genes like me logo Genes that share expression patterns with MIR4313: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR4313 Gene

Orthologs for MIR4313 Gene

Evolution for MIR4313 Gene

ENSEMBL:
Gene Tree for MIR4313 (if available)
TreeFam:
Gene Tree for MIR4313 (if available)

No data available for Orthologs for MIR4313 Gene

Paralogs for MIR4313 Gene

No data available for Paralogs for MIR4313 Gene

Variants for MIR4313 Gene

Sequence variations from dbSNP and Humsavar for MIR4313 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs10710026 -- 75,764,201(+) AGGCT(-/C)CCTCT upstream-variant-2KB
rs111557776 -- 75,764,308(+) AGGGC(A/G)GGTAG upstream-variant-2KB
rs112021703 -- 75,763,216(+) GACTT(C/G)CAGGG nc-transcript-variant, upstream-variant-2KB
rs11635170 -- 75,762,489(+) CCACC(C/G)CGCCC intron-variant, nc-transcript-variant, upstream-variant-2KB
rs11635171 -- 75,762,491(+) ACCGC(G/T)CCCCC intron-variant, nc-transcript-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR4313 Gene

Variant ID Type Subtype PubMed ID
esv2749895 CNV deletion 23290073
esv3636929 CNV loss 21293372
nsv1116463 OTHER inversion 24896259
nsv527186 CNV loss 19592680
nsv974599 CNV duplication 23825009

Relevant External Links for MIR4313 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR4313

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR4313 Gene

Disorders for MIR4313 Gene

Relevant External Links for MIR4313

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR4313

No disorders were found for MIR4313 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR4313 Gene

Publications for MIR4313 Gene

  1. Ago2 immunoprecipitation identifies predicted microRNAs in human embryonic stem cells and neural precursors. (PMID: 19784364) Goff L.A. … Hart R.P. (PLoS ONE 2009) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR4313 Gene

Sources for MIR4313 Gene

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