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Aliases for MIR3972 Gene

Subcategory (RNA class) for MIR3972 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3972 Gene

  • MicroRNA 3972 2 3 5
  • Hsa-Mir-3972 3

External Ids for MIR3972 Gene

Previous GeneCards Identifiers for MIR3972 Gene

  • GC01U903273
  • GC01P017606

Summaries for MIR3972 Gene

Entrez Gene Summary for MIR3972 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3972 Gene

MIR3972 (MicroRNA 3972) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3972 Gene

Genomics for MIR3972 Gene

Regulatory Elements for MIR3972 Gene

Enhancers for MIR3972 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F017276 1.2 Ensembl ENCODE 0.8 -1.1 -1054 0.7 CTCF STAT1 PKNOX1 MAX KLF17 RAD21 SMARCA4 POLR2A PBX2 SMC3 PADI4 PADI3 PADI2 MIR3972 GC01M017106 GC01M017107
GH01F017281 1.2 Ensembl ENCODE 0.8 +4.3 4312 1.2 CTCF MAX MYC ZKSCAN1 PADI4 MIR3972
GH01F017274 1 Ensembl ENCODE 0.8 -3.5 -3489 0.4 CTCF ZNF654 ESRRA REST RAD21 SCRT2 SMC3 ZNF143 PADI4 PADI3 SDHB PADI2 MIR3972 GC01M017106 GC01M017107
GH01F017286 0.8 Ensembl ENCODE 0.4 +9.4 9413 1.4 BCOR ZFP64 JUN MAX ZMYM3 ZIC2 ZNF664 SMC3 RCOR1 FOS PADI4 PADI1 MIR3972
GH01F017289 0.8 Ensembl ENCODE 0.4 +11.9 11895 0.9 GLIS1 ZNF384 MAFK SALL1 PADI3 PADI2 SDHB PADI4 MIR3972
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MIR3972 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3972 Gene

Chromosome:
1
Start:
17,277,889 bp from pter
End:
17,277,975 bp from pter
Size:
87 bases
Orientation:
Plus strand

Genomic View for MIR3972 Gene

Genes around MIR3972 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3972 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3972 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3972 Gene

Proteins for MIR3972 Gene

Post-translational modifications for MIR3972 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3972 Gene

Domains & Families for MIR3972 Gene

Gene Families for MIR3972 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3972: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3972 Gene

Function for MIR3972 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3972 Gene

Localization for MIR3972 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3972 Gene

Pathways & Interactions for MIR3972 Gene

SuperPathways for MIR3972 Gene

No Data Available

Interacting Proteins for MIR3972 Gene

Gene Ontology (GO) - Biological Process for MIR3972 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3972 Gene

Transcripts for MIR3972 Gene

mRNA/cDNA for MIR3972 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3972 Gene

No ASD Table

Relevant External Links for MIR3972 Gene

GeneLoc Exon Structure for
MIR3972
ECgene alternative splicing isoforms for
MIR3972

Expression for MIR3972 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR3972 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3972 Gene:

MIR3972
genes like me logo Genes that share expression patterns with MIR3972: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR3972 Gene

Orthologs for MIR3972 Gene

Evolution for MIR3972 Gene

ENSEMBL:
Gene Tree for MIR3972 (if available)
TreeFam:
Gene Tree for MIR3972 (if available)

No data available for Orthologs for MIR3972 Gene

Paralogs for MIR3972 Gene

No data available for Paralogs for MIR3972 Gene

Variants for MIR3972 Gene

Sequence variations from dbSNP and Humsavar for MIR3972 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs111261309 -- 17,276,348(+) AAATA(A/C)ATAAA intron-variant, upstream-variant-2KB
rs111468256 -- 17,277,888(+) GAGGT(C/G)GCCCA intron-variant, upstream-variant-2KB
rs112312920 -- 17,277,347(+) GCGCC(A/G)CCACG intron-variant, downstream-variant-500B, upstream-variant-2KB
rs115565320 -- 17,277,036(+) CCAGA(C/T)ACCAC intron-variant, downstream-variant-500B, upstream-variant-2KB
rs11586393 -- 17,276,769(+) CTGCA(C/T)GCAGG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3972 Gene

Variant ID Type Subtype PubMed ID
dgv128n100 CNV gain 25217958
dgv129n100 CNV gain 25217958
dgv19e212 CNV gain 25503493
esv2762268 CNV gain 21179565
esv3585363 CNV gain 21293372
nsv1003937 CNV loss 25217958
nsv1011242 CNV gain 25217958
nsv1011954 CNV gain 25217958
nsv508958 CNV insertion 20534489
nsv516116 CNV gain 19592680
nsv545692 CNV loss 21841781
nsv545693 CNV gain 21841781
nsv834291 CNV gain 17160897

Relevant External Links for MIR3972 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3972

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3972 Gene

Disorders for MIR3972 Gene

Relevant External Links for MIR3972

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3972

No disorders were found for MIR3972 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3972 Gene

Publications for MIR3972 Gene

  1. Complete characterization of the microRNAome in a patient with acute myeloid leukemia. (PMID: 20876853) Ramsingh G. … Link D.C. (Blood 2010) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3972 Gene

Sources for MIR3972 Gene

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