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Aliases for MIR3943 Gene

Subcategory (RNA class) for MIR3943 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3943 Gene

  • MicroRNA 3943 2 3 5
  • Hsa-Mir-3943 3

External Ids for MIR3943 Gene

Previous GeneCards Identifiers for MIR3943 Gene

  • GC07U903115
  • GC07P043192

Summaries for MIR3943 Gene

Entrez Gene Summary for MIR3943 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3943 Gene

MIR3943 (MicroRNA 3943) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3943 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3943 Gene

Genomics for MIR3943 Gene

Regulatory Elements for MIR3943 Gene

Enhancers for MIR3943 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H042231 2.5 Ensembl ENCODE dbSUPER 14.6 -915.1 -915106 7 PKNOX1 FEZF1 GLI4 ZNF2 ZBTB7B GLIS2 FOS KLF7 SP3 TSHZ1 HECW1-IT1 LINC01448 MIR3943 GLI3 GC07P042154
GH07H044121 1.1 ENCODE 14.6 +972.1 972145 3 HDGF PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 ZNF143 FOS ENSG00000228680 DDX56 POLM TMED4 SPDYE1 SNORA5B ENSG00000228434 SNORA5C SNHG15 TBRG4
GH07H042830 0.8 ENCODE 14.6 -319.4 -319360 2 CTCF ZSCAN18 ZBTB21 ZNF792 ZNF266 BMI1 RAD21 GATA3 SMC3 ZBTB20 ENSG00000228680 HECW1-IT1 LINC01448 MIR3943 RPL18AP10 GC07M042842 TCP1P1
GH07H043138 0.6 ENCODE 0.4 -10.8 -10793 3 RNF2 ZIC2 SMARCA4 ZNF239 BCL6B SCRT2 GLIS1 CTBP2 HECW1-IT1 HECW1 RNU7-35P RNU6-575P ENSG00000228680 C7orf25 MIR3943
GH07H043135 0.5 ENCODE 0.4 -15.6 -15551 0 JUND ZNF512 FOS HECW1 RNU7-35P HECW1-IT1 MIR3943
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3943 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3943 Gene

Chromosome:
7
Start:
43,150,895 bp from pter
End:
43,150,994 bp from pter
Size:
100 bases
Orientation:
Plus strand

Genomic View for MIR3943 Gene

Genes around MIR3943 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3943 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3943 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3943 Gene

Proteins for MIR3943 Gene

Post-translational modifications for MIR3943 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3943 Gene

Domains & Families for MIR3943 Gene

Gene Families for MIR3943 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3943: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3943 Gene

Function for MIR3943 Gene

Animal Model Products

CRISPR Products

miRNA Products

Clone Products

  • Applied Biological Materials Clones for MIR3943
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3943 Gene

Localization for MIR3943 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3943 Gene

Pathways & Interactions for MIR3943 Gene

SuperPathways for MIR3943 Gene

No Data Available

Interacting Proteins for MIR3943 Gene

Gene Ontology (GO) - Biological Process for MIR3943 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3943 Gene

Drugs & Compounds for MIR3943 Gene

No Compound Related Data Available

Transcripts for MIR3943 Gene

mRNA/cDNA for MIR3943 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

miRNA Products

Clone Products

  • Applied Biological Materials Clones for MIR3943
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3943 Gene

No ASD Table

Relevant External Links for MIR3943 Gene

GeneLoc Exon Structure for
MIR3943
ECgene alternative splicing isoforms for
MIR3943

Expression for MIR3943 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3943 Gene

mRNA differential expression in normal tissues according to GTEx for MIR3943 Gene

This gene is overexpressed in Testis (x53.0).

NURSA nuclear receptor signaling pathways regulating expression of MIR3943 Gene:

MIR3943
genes like me logo Genes that share expression patterns with MIR3943: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3943 Gene

Orthologs for MIR3943 Gene

Evolution for MIR3943 Gene

ENSEMBL:
Gene Tree for MIR3943 (if available)
TreeFam:
Gene Tree for MIR3943 (if available)

No data available for Orthologs for MIR3943 Gene

Paralogs for MIR3943 Gene

No data available for Paralogs for MIR3943 Gene

Variants for MIR3943 Gene

Sequence variations from dbSNP and Humsavar for MIR3943 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000275187 -- 43,149,147(+) TATCT(A/C)CCCCT intron-variant, upstream-variant-2KB
rs1000306221 -- 43,149,429(+) TGTCC(A/C/G)CATCC intron-variant, upstream-variant-2KB
rs1000865335 -- 43,149,832(+) GCATG(A/T)TTTGC intron-variant, upstream-variant-2KB
rs1001949277 -- 43,150,623(+) ATCCA(C/T)CTGCC intron-variant, upstream-variant-2KB
rs1006128470 -- 43,150,870(+) AGGAC(C/T)TCAGC intron-variant, upstream-variant-2KB

Relevant External Links for MIR3943 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3943

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR3943 Gene

Disorders for MIR3943 Gene

Relevant External Links for MIR3943

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3943

No disorders were found for MIR3943 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3943 Gene

Publications for MIR3943 Gene

  1. Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3' trailers. (PMID: 20498841) Liao JY … Qu LH (PloS one 2010) 3 60
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 60

Products for MIR3943 Gene

Sources for MIR3943 Gene

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