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Aliases for MIR3942 Gene

Subcategory (RNA class) for MIR3942 Gene


Quality Score for this RNA gene is


Aliases for MIR3942 Gene

  • MicroRNA 3942 2 3 5
  • Hsa-Mir-3942 3

External Ids for MIR3942 Gene

Previous GeneCards Identifiers for MIR3942 Gene

  • GC15U901302
  • GC15M035668

Summaries for MIR3942 Gene

Entrez Gene Summary for MIR3942 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3942 Gene

MIR3942 (MicroRNA 3942) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3942 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3942 Gene

Genomics for MIR3942 Gene

Regulatory Elements for MIR3942 Gene

Enhancers for MIR3942 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15H035304 1.5 FANTOM5 Ensembl ENCODE 0.2 +64.8 64761 5.6 TBP FOXA2 PKNOX1 FEZF1 RAD21 YY1 TCF12 GATA2 ZNF366 ZSCAN5C RBM17P4 MIR3942
GH15H035361 0.4 ENCODE 0.4 +9.9 9872 1.1 POLR2A MIR3942 RBM17P4
GH15H035311 0.4 ENCODE 0.2 +60.6 60570 0.2 JUND RBM17P4 MIR3942
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3942 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR3942 Gene

Genomic Locations for MIR3942 Gene
109 bases
Minus strand

Genomic View for MIR3942 Gene

Genes around MIR3942 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3942 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3942 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3942 Gene

ORGUL Member Location for MIR3942 Gene

ORGUL Member Location for MIR3942 gene

Proteins for MIR3942 Gene

Post-translational modifications for MIR3942 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3942 Gene

Domains & Families for MIR3942 Gene

Gene Families for MIR3942 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3942: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3942 Gene

Function for MIR3942 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3942 Gene

Localization for MIR3942 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3942 Gene

Pathways & Interactions for MIR3942 Gene

SuperPathways for MIR3942 Gene

No Data Available

Interacting Proteins for MIR3942 Gene

Gene Ontology (GO) - Biological Process for MIR3942 Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR3942 Gene

Drugs & Compounds for MIR3942 Gene

No Compound Related Data Available

Transcripts for MIR3942 Gene

mRNA/cDNA for MIR3942 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3942 Gene

No ASD Table

Relevant External Links for MIR3942 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR3942 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3942 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3942 Gene:

genes like me logo Genes that share expression patterns with MIR3942: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3942 Gene

Orthologs for MIR3942 Gene

Evolution for MIR3942 Gene

Gene Tree for MIR3942 (if available)
Gene Tree for MIR3942 (if available)

No data available for Orthologs for MIR3942 Gene

Paralogs for MIR3942 Gene

No data available for Paralogs for MIR3942 Gene

Variants for MIR3942 Gene

Sequence variations from dbSNP and Humsavar for MIR3942 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1002213759 -- 35,372,327(+) TTTCA(A/G)GTAAC intron-variant, nc-transcript-variant, utr-variant-3-prime
rs1002239254 -- 35,371,784(+) GCATC(A/G)TGACA intron-variant, downstream-variant-500B, utr-variant-3-prime
rs1002328180 -- 35,372,071(+) AACTA(G/T)TCATA intron-variant, downstream-variant-500B, utr-variant-3-prime
rs1003207569 -- 35,373,697(+) ACATT(C/T)TTGTT intron-variant, upstream-variant-2KB
rs1006466876 -- 35,372,781(+) ATTTC(C/G)TATGA intron-variant, upstream-variant-2KB, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for MIR3942 Gene

Variant ID Type Subtype PubMed ID
nsv832968 CNV loss 17160897
nsv1489 CNV insertion 18451855
nsv1050949 CNV loss 25217958
nsv1043818 CNV loss 25217958

Relevant External Links for MIR3942 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3942 Gene

Disorders for MIR3942 Gene

Relevant External Links for MIR3942

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MIR3942 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3942 Gene

Publications for MIR3942 Gene

  1. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H … Rovira C (Cancer research 2011) 3 60
  2. Discovery of new microRNAs by small RNAome deep sequencing in childhood acute lymphoblastic leukemia. (PMID: 21606961) Schotte D … den Boer ML (Leukemia 2011) 3 60
  3. Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3' trailers. (PMID: 20498841) Liao JY … Qu LH (PloS one 2010) 3 60
  4. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 60

Products for MIR3942 Gene

Sources for MIR3942 Gene

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