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Aliases for MIR3942 Gene

Subcategory (RNA class) for MIR3942 Gene


Quality Score for this RNA gene is


Aliases for MIR3942 Gene

  • MicroRNA 3942 2 3 5
  • Hsa-Mir-3942 3

External Ids for MIR3942 Gene

Previous GeneCards Identifiers for MIR3942 Gene

  • GC15U901302
  • GC15M035668

Summaries for MIR3942 Gene

Entrez Gene Summary for MIR3942 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3942 Gene

MIR3942 (MicroRNA 3942) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3942 Gene

Genomics for MIR3942 Gene

Regulatory Elements for MIR3942 Gene

Enhancers for MIR3942 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F035361 0.5 ENCODE 0.4 +9.9 9872 1.1 MIR3942 RBM17P4
GH15F035304 1 FANTOM5 Ensembl ENCODE 0.2 +64.8 64761 5.6 PKNOX1 SIN3A FEZF1 RAD21 YY1 GATA2 ZNF366 SCRT2 USF2 ZEB2 RBM17P4 MIR3942
GH15F035311 1 ENCODE 0.2 +60.6 60570 0.2 JUND RBM17P4 MIR3942
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MIR3942 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3942 Gene

35,372,256 bp from pter
35,372,364 bp from pter
109 bases
Minus strand

Genomic View for MIR3942 Gene

Genes around MIR3942 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3942 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3942 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3942 Gene

ORGUL Member Location for MIR3942 Gene

ORGUL Member Location for MIR3942 gene

Proteins for MIR3942 Gene

Post-translational modifications for MIR3942 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3942 Gene

Domains & Families for MIR3942 Gene

Gene Families for MIR3942 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3942: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3942 Gene

Function for MIR3942 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3942 Gene

Localization for MIR3942 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3942 Gene

Pathways & Interactions for MIR3942 Gene

SuperPathways for MIR3942 Gene

No Data Available

Interacting Proteins for MIR3942 Gene

Gene Ontology (GO) - Biological Process for MIR3942 Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR3942 Gene

Transcripts for MIR3942 Gene

mRNA/cDNA for MIR3942 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3942 Gene

No ASD Table

Relevant External Links for MIR3942 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR3942 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR3942 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3942 Gene:

genes like me logo Genes that share expression patterns with MIR3942: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR3942 Gene

Orthologs for MIR3942 Gene

Evolution for MIR3942 Gene

Gene Tree for MIR3942 (if available)
Gene Tree for MIR3942 (if available)

No data available for Orthologs for MIR3942 Gene

Paralogs for MIR3942 Gene

No data available for Paralogs for MIR3942 Gene

Variants for MIR3942 Gene

Sequence variations from dbSNP and Humsavar for MIR3942 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs10519996 -- 35,373,564(+) CCACA(C/G)GTGCA nc-transcript-variant, upstream-variant-2KB, reference, missense, utr-variant-3-prime
rs111282583 -- 35,373,639(+) ATTTA(C/T)ATGCT intron-variant, upstream-variant-2KB
rs111284748 -- 35,373,497(+) AAATC(A/G)CTGTG intron-variant, downstream-variant-500B, upstream-variant-2KB, reference, synonymous-codon
rs111437314 -- 35,372,538(+) AAACA(C/T)TTGGA intron-variant, upstream-variant-2KB, utr-variant-3-prime
rs111595543 -- 35,373,169(+) AATTT(A/G)TCCTC intron-variant, downstream-variant-500B, upstream-variant-2KB, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for MIR3942 Gene

Variant ID Type Subtype PubMed ID
nsv1043818 CNV loss 25217958
nsv1050949 CNV loss 25217958
nsv1489 CNV insertion 18451855
nsv832968 CNV loss 17160897

Relevant External Links for MIR3942 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3942 Gene

Disorders for MIR3942 Gene

Relevant External Links for MIR3942

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MIR3942 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3942 Gene

Publications for MIR3942 Gene

  1. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H. … Rovira C. (Cancer Res. 2011) 3 64
  2. Discovery of new microRNAs by small RNAome deep sequencing in childhood acute lymphoblastic leukemia. (PMID: 21606961) Schotte D. … den Boer M.L. (Leukemia 2011) 3 64
  3. Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3' trailers. (PMID: 20498841) Liao J.Y. … Qu L.H. (PLoS ONE 2010) 3 64
  4. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3942 Gene

Sources for MIR3942 Gene

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