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Aliases for MIR3941 Gene

Subcategory (RNA class) for MIR3941 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3941 Gene

  • MicroRNA 3941 2 3 5
  • Hsa-Mir-3941 3

External Ids for MIR3941 Gene

Previous GeneCards Identifiers for MIR3941 Gene

  • GC10U901440
  • GC10P124178

Summaries for MIR3941 Gene

Entrez Gene Summary for MIR3941 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3941 Gene

MIR3941 (MicroRNA 3941) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3941 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3941 Gene

Genomics for MIR3941 Gene

Regulatory Elements for MIR3941 Gene

Enhancers for MIR3941 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10H122415 0.7 Ensembl ENCODE 0.7 -0.2 -177 2 RCOR1 ATF2 PLEKHA1 ARMS2 MIR3941
GH10H122372 1.3 Ensembl ENCODE 0.3 -42.1 -42121 4 PKNOX1 ATF1 ARID4B SIN3A ZNF2 YY1 ETS1 ZNF766 GLIS2 ZNF207 ARMS2 PLEKHA1 MIR3941
GH10H122407 0.2 ENCODE 0.4 -9.0 -9006 0 PLEKHA1 MIR3941
GH10H122377 0.2 Ensembl 0.3 -39.5 -39465 0 PLEKHA1 MIR3941
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3941 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3941 Gene

Chromosome:
10
Start:
122,416,965 bp from pter
End:
122,417,067 bp from pter
Size:
103 bases
Orientation:
Plus strand

Genomic View for MIR3941 Gene

Genes around MIR3941 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3941 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3941 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3941 Gene

Proteins for MIR3941 Gene

Post-translational modifications for MIR3941 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3941 Gene

Domains & Families for MIR3941 Gene

Gene Families for MIR3941 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3941: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3941 Gene

Function for MIR3941 Gene

Animal Model Products

CRISPR Products

miRNA Products

Clone Products

  • Applied Biological Materials Clones for MIR3941
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3941 Gene

Localization for MIR3941 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3941 Gene

Pathways & Interactions for MIR3941 Gene

SuperPathways for MIR3941 Gene

No Data Available

Interacting Proteins for MIR3941 Gene

Gene Ontology (GO) - Biological Process for MIR3941 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3941 Gene

Drugs & Compounds for MIR3941 Gene

No Compound Related Data Available

Transcripts for MIR3941 Gene

mRNA/cDNA for MIR3941 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

miRNA Products

Clone Products

  • Applied Biological Materials Clones for MIR3941
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3941 Gene

No ASD Table

Relevant External Links for MIR3941 Gene

GeneLoc Exon Structure for
MIR3941
ECgene alternative splicing isoforms for
MIR3941

Expression for MIR3941 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3941 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3941 Gene:

MIR3941
genes like me logo Genes that share expression patterns with MIR3941: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3941 Gene

Orthologs for MIR3941 Gene

Evolution for MIR3941 Gene

ENSEMBL:
Gene Tree for MIR3941 (if available)
TreeFam:
Gene Tree for MIR3941 (if available)

No data available for Orthologs for MIR3941 Gene

Paralogs for MIR3941 Gene

No data available for Paralogs for MIR3941 Gene

Variants for MIR3941 Gene

Sequence variations from dbSNP and Humsavar for MIR3941 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1001315744 -- 122,417,166(+) TACTT(C/T)ATTAA intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1002986376 -- 122,415,815(+) GTATG(C/T)TAAAC intron-variant, upstream-variant-2KB
rs1005436292 -- 122,416,641(+) GATGA(A/G)TTTTT intron-variant, upstream-variant-2KB
rs1005624618 -- 122,417,550(+) AGGCT(A/G)ATGCA intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1006855920 -- 122,415,508(+) ATGTT(-/A)ACGCC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3941 Gene

Variant ID Type Subtype PubMed ID
dgv987n100 CNV loss 25217958
nsv1042640 CNV loss 25217958

Relevant External Links for MIR3941 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3941

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3941 Gene

Disorders for MIR3941 Gene

Relevant External Links for MIR3941

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3941

No disorders were found for MIR3941 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3941 Gene

Publications for MIR3941 Gene

  1. miR-3941: a novel microRNA that controls IGBP1 expression and is associated with malignant progression of lung adenocarcinoma. (PMID: 28012229) Sato T … Noguchi M (Cancer science 2016) 3 60
  2. Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3' trailers. (PMID: 20498841) Liao JY … Qu LH (PloS one 2010) 3 60
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 60

Products for MIR3941 Gene

Sources for MIR3941 Gene

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