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Aliases for MIR3939 Gene

Subcategory (RNA class) for MIR3939 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR3939 Gene

  • MicroRNA 3939 2 3 5
  • Hsa-Mir-3939 3
  • Mir-3939 3

External Ids for MIR3939 Gene

Previous GeneCards Identifiers for MIR3939 Gene

  • GC06U902090
  • GC06M167413

Summaries for MIR3939 Gene

Entrez Gene Summary for MIR3939 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3939 Gene

MIR3939 (MicroRNA 3939) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3939 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3939 Gene

Genomics for MIR3939 Gene

GeneHancer (GH) Regulatory Elements for MIR3939 Gene

Promoters and enhancers for MIR3939 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I166997 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE 550.8 -1.8 -1775 5 HDGF FOXA2 ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 POLR2B ENSG00000272980 FGFR1OP LOC105378120 MIR3939 RNASET2 HNRNPA1P49 GPR31 GC06P167042 PIR56971
GH06I166996 Enhancer 0.6 ENCODE 550.8 +1.4 1354 0.1 GATAD2A HLF ARID4B CEBPB CEBPG HMG20A ZNF644 KMT2B TEAD3 NFIL3 PIR38824 PIR40836 MIR3939 LOC105378120
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR3939 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR3939 Gene

Genomic Locations for MIR3939 Gene
chr6:166,997,807-166,997,912
(GRCh38/hg38)
Size:
106 bases
Orientation:
Minus strand
chr6:167,411,295-167,411,400
(GRCh37/hg19)

Genomic View for MIR3939 Gene

Genes around MIR3939 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3939 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3939 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3939 Gene

ORGUL Member Location for MIR3939 Gene

ORGUL Member Location for MIR3939 gene

Proteins for MIR3939 Gene

Post-translational modifications for MIR3939 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3939 Gene

Domains & Families for MIR3939 Gene

Gene Families for MIR3939 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3939: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3939 Gene

Function for MIR3939 Gene

Phenotypes From GWAS Catalog for MIR3939 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3939 Gene

Localization for MIR3939 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3939 Gene

Pathways & Interactions for MIR3939 Gene

SuperPathways for MIR3939 Gene

No Data Available

Interacting Proteins for MIR3939 Gene

Gene Ontology (GO) - Biological Process for MIR3939 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3939 Gene

Drugs & Compounds for MIR3939 Gene

No Compound Related Data Available

Transcripts for MIR3939 Gene

mRNA/cDNA for MIR3939 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3939 Gene

No ASD Table

Relevant External Links for MIR3939 Gene

GeneLoc Exon Structure for
MIR3939
ECgene alternative splicing isoforms for
MIR3939

Expression for MIR3939 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3939 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3939 Gene:

MIR3939
genes like me logo Genes that share expression patterns with MIR3939: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3939 Gene

Orthologs for MIR3939 Gene

Evolution for MIR3939 Gene

ENSEMBL:
Gene Tree for MIR3939 (if available)
TreeFam:
Gene Tree for MIR3939 (if available)

No data available for Orthologs for MIR3939 Gene

Paralogs for MIR3939 Gene

No data available for Paralogs for MIR3939 Gene

Variants for MIR3939 Gene

Sequence variations from dbSNP and Humsavar for MIR3939 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000046212 -- 166,999,493(-) C/A upstream_transcript_variant
rs1001262782 -- 166,999,344(-) G/T upstream_transcript_variant
rs1001964893 -- 166,998,256(-) A/G upstream_transcript_variant
rs1002725259 -- 166,999,828(-) A/ upstream_transcript_variant
rs1003553524 -- 166,998,702(-) G/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR3939 Gene

Variant ID Type Subtype PubMed ID
esv1673761 CNV insertion 17803354
nsv605260 CNV gain 21841781

Additional Variant Information for MIR3939 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3939

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3939 Gene

Disorders for MIR3939 Gene

Additional Disease Information for MIR3939

No disorders were found for MIR3939 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3939 Gene

Publications for MIR3939 Gene

  1. Genome-wide association study of Crohn's disease in Koreans revealed three new susceptibility loci and common attributes of genetic susceptibility across ethnic populations. (PMID: 23850713) Yang SK … Song K (Gut 2014) 3 58
  2. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A … Griffiths-Jones S (Nucleic acids research 2011) 3 58
  3. Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3' trailers. (PMID: 20498841) Liao JY … Qu LH (PloS one 2010) 3 58
  4. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR3939 Gene

Sources for MIR3939 Gene

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