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MIR3936 Gene(RNA Gene)

MicroRNA 3936

GCID:
GC05M132365
GIFtS:
17
Genes Participants
UDN Logo

Aliases for MIR3936 Gene

Subcategory (RNA class) for MIR3936 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3936 Gene

  • MicroRNA 3936 2 3 5
  • Hsa-Mir-3936 3
  • Mir-3936 3

External Ids for MIR3936 Gene

ORGUL Members for MIR3936 Gene

Previous GeneCards Identifiers for MIR3936 Gene

  • GC05U901511
  • GC05M131703

Summaries for MIR3936 Gene

Entrez Gene Summary for MIR3936 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3936 Gene

MIR3936 (MicroRNA 3936) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3936 Gene

Genomics for MIR3936 Gene

Products:

  1. Regulatory Element

Regulatory Elements for MIR3936 Gene

Enhancers for MIR3936 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G133048 1.4 ENCODE dbSUPER 10.9 -685.5 -685502 5.5 MLX CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 RAD50 AFF4 IL4 ENSG00000224431 ENSG00000248648 HSPA4 MIR3936 ENSG00000202533 GC05M133049 GC05M133050
GH05G132377 0.9 ENCODE 12.5 -12.6 -12574 1.7 PKNOX1 NFIB SIN3A BMI1 RAD21 ZBTB40 FOS RCOR1 HCFC1 ZHX2 MIR3936HG MIR3936 P4HA2 SLC22A4 ENSG00000230612 SLC22A5 PIR35375
GH05G132362 1.2 Ensembl ENCODE 0.7 +0.9 870 4.6 SIN3A FEZF1 BRCA1 ZNF2 YY1 FOS TSHZ1 ZNF491 ZNF518A MAFF MIR3936HG RAD50 AFF4 P4HA2 SLC22A4 ENSG00000224431 IL4 ENSG00000202533 ENSG00000248648 PDLIM4
GH05G132353 1.1 Ensembl ENCODE dbSUPER 0.4 +10.7 10725 3.0 JUND ZNF133 CEBPB ZBTB33 CEBPG MNT ZNF83 MIR3936HG P4HA2 SLC22A4 RNU7-15P RNA5SP192 SLC22A5 PIR38624 MIR3936
GH05G132357 1 ENCODE dbSUPER 0.4 +7.0 7025 2.1 PKNOX1 WRNIP1 BMI1 EBF1 ZNF697 ZNF7 ZNF121 NFYB IKZF2 MTA2 MIR3936HG SLC22A5 RAD50 AFF4 P4HA2 SLC22A4 PDLIM4 ENSG00000230612 ZCCHC10 RNU7-15P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3936 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3936 Gene

Chromosome:
5
Start:
132,365,490 bp from pter
End:
132,365,599 bp from pter
Size:
110 bases
Orientation:
Minus strand

Genomic View for MIR3936 Gene

Genes around MIR3936 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3936 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3936 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for MIR3936 Gene

Proteins for MIR3936 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for MIR3936 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3936 Gene

Domains & Families for MIR3936 Gene

Gene Families for MIR3936 Gene

HGNC:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3936: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3936 Gene

Function for MIR3936 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3936 Gene

Localization for MIR3936 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3936 Gene

Pathways & Interactions for MIR3936 Gene

SuperPathways for MIR3936 Gene

PathCards logo More details on SuperPathways for MIR3936
No Data Available

Interacting Proteins for MIR3936 Gene

Gene Ontology (GO) - Biological Process for MIR3936 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3936 Gene

Drugs & Compounds for MIR3936 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for MIR3936 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for MIR3936 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3936 Gene

No ASD Table

Relevant External Links for MIR3936 Gene

GeneLoc Exon Structure for
MIR3936
ECgene alternative splicing isoforms for
MIR3936

Expression for MIR3936 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3936 Gene

mRNA expression in normal human tissues for MIR3936 Gene
mRNA expression by GTEx for MIR3936 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3936 Gene:

MIR3936
genes like me logo Genes that share expression patterns with MIR3936: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3936 Gene

Orthologs for MIR3936 Gene

Evolution for MIR3936 Gene

ENSEMBL:
Gene Tree for MIR3936 (if available)
TreeFam:
Gene Tree for MIR3936 (if available)

No data available for Orthologs for MIR3936 Gene

Paralogs for MIR3936 Gene

No data available for Paralogs for MIR3936 Gene

Variants for MIR3936 Gene

Sequence variations from dbSNP and Humsavar for MIR3936 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000831159 -- 132,365,485(+) CATAA(A/G)TTATT intron-variant, downstream-variant-500B
rs1003119326 -- 132,365,611(+) CTCTG(A/T)TGCTG intron-variant, upstream-variant-2KB
rs1004008956 -- 132,365,382(+) ATAGA(C/T)AAGAA intron-variant, downstream-variant-500B
rs1004239316 -- 132,366,759(+) TGCTT(A/G)TAACA nc-transcript-variant, upstream-variant-2KB
rs1005197699 -- 132,367,085(+) GGCCT(C/T)AGGTA intron-variant, upstream-variant-2KB

Relevant External Links for MIR3936 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3936

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR3936 Gene

Disorders for MIR3936 Gene

Relevant External Links for MIR3936

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3936

No disorders were found for MIR3936 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3936 Gene

Publications for MIR3936 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  2. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H. … Rovira C. (Cancer Res. 2011) 3 64
  3. Discovery of new microRNAs by small RNAome deep sequencing in childhood acute lymphoblastic leukemia. (PMID: 21606961) Schotte D. … den Boer M.L. (Leukemia 2011) 3 64
  4. Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3' trailers. (PMID: 20498841) Liao J.Y. … Qu L.H. (PLoS ONE 2010) 3 64
  5. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3936 Gene

Sources for MIR3936 Gene

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