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Aliases for MIR3936 Gene

Subcategory (RNA class) for MIR3936 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3936 Gene

  • MicroRNA 3936 2 3 5
  • Hsa-Mir-3936 3
  • Mir-3936 3

External Ids for MIR3936 Gene

Previous GeneCards Identifiers for MIR3936 Gene

  • GC05U901511
  • GC05M131703

Summaries for MIR3936 Gene

Entrez Gene Summary for MIR3936 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3936 Gene

MIR3936 (MicroRNA 3936) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3936 Gene

Genomics for MIR3936 Gene

Regulatory Elements for MIR3936 Gene

Enhancers for MIR3936 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F132377 0.2 ENCODE 12.5 -12.6 -12574 1.7 SIX4 ESRRA PKNOX1 JUN SIN3A ZBTB40 RAD21 ZKSCAN1 GATA3 MTA3 LOC553103 MIR3936 P4HA2 SLC22A4 ENSG00000230612 SLC22A5 PIR35375
GH05F133048 0.6 ENCODE 10.9 -685.5 -685502 5.5 HDGF PKNOX1 CREB3L1 MLX WRNIP1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 AFF4 IL4 RAD50 HSPA4 MIR3936 ENSG00000224431 ENSG00000202533 GC05M133049 GC05M133050
GH05F132362 1.1 Ensembl ENCODE 0.8 +0.9 870 4.6 SIN3A FEZF1 BRCA1 ZNF2 YY1 TSHZ1 ZNF518A ZNF264 MAFF PBX2 LOC553103 RAD50 AFF4 IL4 ENSG00000202533 P4HA2 SLC22A4 FNIP1 PDLIM4 IL5
GH05F132357 0.4 ENCODE 0.4 +7.0 7025 2.1 PKNOX1 WRNIP1 BMI1 EBF1 ZNF7 ZNF121 NFYB MTA2 ZNF407 EP300 LOC553103 SLC22A5 P4HA2 SLC22A4 PDLIM4 ENSG00000230612 RNU7-15P RNA5SP192 IL5 RAD50
GH05F132353 1.2 Ensembl ENCODE 0.4 +10.7 10725 3.0 JUND ZNF133 CEBPB ZBTB33 MNT ZNF83 LOC553103 P4HA2 SLC22A4 RNU7-15P RNA5SP192 SLC22A5 PIR38624 MIR3936
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MIR3936 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3936 Gene

Chromosome:
5
Start:
132,365,490 bp from pter
End:
132,365,599 bp from pter
Size:
110 bases
Orientation:
Minus strand

Genomic View for MIR3936 Gene

Genes around MIR3936 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3936 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3936 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3936 Gene

Proteins for MIR3936 Gene

Post-translational modifications for MIR3936 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3936 Gene

Domains & Families for MIR3936 Gene

Gene Families for MIR3936 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3936: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3936 Gene

Function for MIR3936 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3936 Gene

Localization for MIR3936 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3936 Gene

Pathways & Interactions for MIR3936 Gene

SuperPathways for MIR3936 Gene

No Data Available

Interacting Proteins for MIR3936 Gene

Gene Ontology (GO) - Biological Process for MIR3936 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3936 Gene

Transcripts for MIR3936 Gene

mRNA/cDNA for MIR3936 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3936 Gene

No ASD Table

Relevant External Links for MIR3936 Gene

GeneLoc Exon Structure for
MIR3936
ECgene alternative splicing isoforms for
MIR3936

Expression for MIR3936 Gene

mRNA expression in normal human tissues for MIR3936 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3936 Gene:

MIR3936
genes like me logo Genes that share expression patterns with MIR3936: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR3936 Gene

Orthologs for MIR3936 Gene

Evolution for MIR3936 Gene

ENSEMBL:
Gene Tree for MIR3936 (if available)
TreeFam:
Gene Tree for MIR3936 (if available)

No data available for Orthologs for MIR3936 Gene

Paralogs for MIR3936 Gene

No data available for Paralogs for MIR3936 Gene

Variants for MIR3936 Gene

Sequence variations from dbSNP and Humsavar for MIR3936 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs111259980 -- 132,365,151(+) ATTGC(A/C)CCATT intron-variant, downstream-variant-500B
rs111342988 -- 132,367,490(+) CTGGA(C/T)GGCAC intron-variant, upstream-variant-2KB
rs111421603 -- 132,365,719(+) GTGCA(-/GTGGC)GCGAT intron-variant, upstream-variant-2KB
rs113866317 -- 132,365,810(+) GGCGC(A/G)TGCCA intron-variant, upstream-variant-2KB
rs116597000 -- 132,367,044(+) TAAAA(C/T)AGGAA intron-variant, upstream-variant-2KB

Relevant External Links for MIR3936 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3936

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR3936 Gene

Disorders for MIR3936 Gene

Relevant External Links for MIR3936

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3936

No disorders were found for MIR3936 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3936 Gene

Publications for MIR3936 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  2. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H. … Rovira C. (Cancer Res. 2011) 3 64
  3. Discovery of new microRNAs by small RNAome deep sequencing in childhood acute lymphoblastic leukemia. (PMID: 21606961) Schotte D. … den Boer M.L. (Leukemia 2011) 3 64
  4. Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3' trailers. (PMID: 20498841) Liao J.Y. … Qu L.H. (PLoS ONE 2010) 3 64
  5. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3936 Gene

Sources for MIR3936 Gene

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