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Aliases for MIR3935 Gene

Subcategory (RNA class) for MIR3935 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3935 Gene

  • MicroRNA 3935 2 3 5
  • Hsa-Mir-3935 3

External Ids for MIR3935 Gene

Previous GeneCards Identifiers for MIR3935 Gene

  • GC16U901266
  • GC16P056281

Summaries for MIR3935 Gene

Entrez Gene Summary for MIR3935 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3935 Gene

MIR3935 (MicroRNA 3935) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3935 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3935 Gene

Genomics for MIR3935 Gene

Regulatory Elements for MIR3935 Gene

Enhancers for MIR3935 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16H056245 1.1 ENCODE dbSUPER 0.7 +0.4 448 1 CTCF PKNOX1 ESRRA ZNF175 MAX ZIC2 RAD21 YY1 CTBP1 GATA3 MIR3935 PIR47916
GH16H056259 1.5 Ensembl ENCODE dbSUPER 0.4 +16.7 16727 4 PKNOX1 FOXA2 ARID4B YY1 TCF12 FOS SP5 REST MIER2 PPARG GNAO1 ENSG00000260198 PIR47916 MIR3935
GH16H056268 1.2 Ensembl ENCODE dbSUPER 0.3 +24.2 24206 1 CTCF SMARCE1 TAF1 MAX REST ZIC2 RAD21 YY1 JUND ATF3 PIR47916 MIR3935
GH16H056258 0.9 ENCODE dbSUPER 0.4 +13.4 13424 0 SOX5 SOX13 SAP130 ZNF644 THRB RARA KDM1A NR2F6 SMAD4 RXRB GNAO1 MIR3935 PIR47916
GH16H056257 0.8 ENCODE dbSUPER 0.4 +11.0 10956 0 JUND MAX HNF4A REST YY1 GNAO1 ENSG00000260198 MIR3935 PIR47916
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3935 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3935 Gene

Chromosome:
16
Start:
56,245,520 bp from pter
End:
56,245,623 bp from pter
Size:
104 bases
Orientation:
Plus strand

Genomic View for MIR3935 Gene

Genes around MIR3935 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3935 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3935 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3935 Gene

Proteins for MIR3935 Gene

Post-translational modifications for MIR3935 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3935 Gene

Domains & Families for MIR3935 Gene

Gene Families for MIR3935 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3935: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3935 Gene

Function for MIR3935 Gene

Animal Model Products

CRISPR Products

miRNA Products

Clone Products

  • Applied Biological Materials Clones for MIR3935
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3935 Gene

Localization for MIR3935 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3935 Gene

Pathways & Interactions for MIR3935 Gene

SuperPathways for MIR3935 Gene

No Data Available

Interacting Proteins for MIR3935 Gene

Gene Ontology (GO) - Biological Process for MIR3935 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3935 Gene

Drugs & Compounds for MIR3935 Gene

No Compound Related Data Available

Transcripts for MIR3935 Gene

mRNA/cDNA for MIR3935 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

miRNA Products

Clone Products

  • Applied Biological Materials Clones for MIR3935
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3935 Gene

No ASD Table

Relevant External Links for MIR3935 Gene

GeneLoc Exon Structure for
MIR3935
ECgene alternative splicing isoforms for
MIR3935

Expression for MIR3935 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3935 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3935 Gene:

MIR3935
genes like me logo Genes that share expression patterns with MIR3935: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3935 Gene

Orthologs for MIR3935 Gene

Evolution for MIR3935 Gene

ENSEMBL:
Gene Tree for MIR3935 (if available)
TreeFam:
Gene Tree for MIR3935 (if available)

No data available for Orthologs for MIR3935 Gene

Paralogs for MIR3935 Gene

No data available for Paralogs for MIR3935 Gene

Variants for MIR3935 Gene

Sequence variations from dbSNP and Humsavar for MIR3935 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1002569929 -- 56,244,894(+) AATAG(C/G)ACCTT intron-variant, upstream-variant-2KB
rs1007091855 -- 56,244,459(+) AGGGT(A/C/G)GTAAC intron-variant, upstream-variant-2KB
rs1008761850 -- 56,245,924(+) GATTG(A/G)GTGTG intron-variant, downstream-variant-500B
rs1012535376 -- 56,245,235(+) CAGGG(C/T)AATTT intron-variant, upstream-variant-2KB
rs1012566682 -- 56,245,523(+) GTGGA(A/T)GTGTT intron-variant, nc-transcript-variant

Relevant External Links for MIR3935 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3935

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR3935 Gene

Disorders for MIR3935 Gene

Relevant External Links for MIR3935

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3935

No disorders were found for MIR3935 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3935 Gene

Publications for MIR3935 Gene

  1. Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3' trailers. (PMID: 20498841) Liao JY … Qu LH (PloS one 2010) 3 60
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 60

Products for MIR3935 Gene

Sources for MIR3935 Gene

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