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Aliases for MIR3934 Gene

Subcategory (RNA class) for MIR3934 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3934 Gene

  • MicroRNA 3934 2 3 5
  • Hsa-Mir-3934 3

External Ids for MIR3934 Gene

Previous GeneCards Identifiers for MIR3934 Gene

  • GC06U902132

Summaries for MIR3934 Gene

Entrez Gene Summary for MIR3934 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3934 Gene

MIR3934 (MicroRNA 3934) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3934 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3934 Gene

Genomics for MIR3934 Gene

GeneHancer (GH) Regulatory Elements for MIR3934 Gene

Promoters and enhancers for MIR3934 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I033699 Enhancer 0.5 ENCODE dbSUPER 550.8 +1.2 1191 0.2 RXRA MIR3934 UQCC2
GH06I033698 Enhancer 0.4 ENCODE dbSUPER 550.8 +0.6 627 0.3 MIR3934 UQCC2
GH06I033691 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.8 -3.2 -3176 7.2 PKNOX1 KLF17 MZF1 FEZF1 GLIS2 SCRT2 RUNX3 NR2F2 ZFP69B MAFF UQCC2 IP6K3 BAK1 LEMD2 HLA-DPA1 RPS18 ITPR3 MIR3934 LOC105375023
GH06I033710 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.4 +13.3 13283 2 HDGF SMAD1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 UQCC2 LEMD2 IP6K3 DAXX BRD2 RGL2 WDR46 RXRB LINC00336 VPS52
GH06I033700 Enhancer 0.9 ENCODE dbSUPER 0.8 +2.3 2345 1.4 ELF3 HDGF CTCF RB1 SIN3A EBF1 ZNF2 RAD21 CC2D1A CTBP1 UQCC2 IP6K3 ITPR3 HLA-DPA1 MIR3934
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR3934 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR3934 Gene

Genomic Locations for MIR3934 Gene
chr6:33,698,128-33,698,234
(GRCh38/hg38)
Size:
107 bases
Orientation:
Plus strand
chr6:33,665,905-33,666,011
(GRCh37/hg19)

Genomic View for MIR3934 Gene

Genes around MIR3934 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3934 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3934 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3934 Gene

Proteins for MIR3934 Gene

Post-translational modifications for MIR3934 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3934 Gene

Domains & Families for MIR3934 Gene

Gene Families for MIR3934 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3934: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3934 Gene

Function for MIR3934 Gene

Phenotypes From GWAS Catalog for MIR3934 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3934 Gene

Localization for MIR3934 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3934 Gene

Pathways & Interactions for MIR3934 Gene

SuperPathways for MIR3934 Gene

No Data Available

Interacting Proteins for MIR3934 Gene

Gene Ontology (GO) - Biological Process for MIR3934 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3934 Gene

Drugs & Compounds for MIR3934 Gene

No Compound Related Data Available

Transcripts for MIR3934 Gene

mRNA/cDNA for MIR3934 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3934 Gene

No ASD Table

Relevant External Links for MIR3934 Gene

GeneLoc Exon Structure for
MIR3934
ECgene alternative splicing isoforms for
MIR3934

Expression for MIR3934 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3934 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3934 Gene:

MIR3934
genes like me logo Genes that share expression patterns with MIR3934: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3934 Gene

Orthologs for MIR3934 Gene

Evolution for MIR3934 Gene

ENSEMBL:
Gene Tree for MIR3934 (if available)
TreeFam:
Gene Tree for MIR3934 (if available)

No data available for Orthologs for MIR3934 Gene

Paralogs for MIR3934 Gene

No data available for Paralogs for MIR3934 Gene

Variants for MIR3934 Gene

Sequence variations from dbSNP and Humsavar for MIR3934 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1057522744 likely-benign, not specified 33,697,662(+) A/G upstream_transcript_variant
rs34770331 likely-benign, not specified 33,697,713(+) C/T upstream_transcript_variant
rs115920642 benign, not specified 33,697,637(+) G/A upstream_transcript_variant
rs34628420 benign, not specified 33,697,681(+) T/C upstream_transcript_variant
rs1000695509 -- 33,698,513(+) C/T downstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR3934 Gene

Variant ID Type Subtype PubMed ID
dgv85n68 CNV loss 17160897
esv3608630 CNV gain 21293372

Additional Variant Information for MIR3934 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3934

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3934 Gene

Disorders for MIR3934 Gene

Additional Disease Information for MIR3934

No disorders were found for MIR3934 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3934 Gene

Publications for MIR3934 Gene

  1. Deep sequencing of small RNAs from human skin reveals major alterations in the psoriasis miRNAome. (PMID: 21807764) Joyce CE … Bowcock AM (Human molecular genetics 2011) 3 58
  2. Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3' trailers. (PMID: 20498841) Liao JY … Qu LH (PloS one 2010) 3 58
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR3934 Gene

Sources for MIR3934 Gene

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