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Aliases for MIR3929 Gene

Subcategory (RNA class) for MIR3929 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR3929 Gene

  • MicroRNA 3929 2 3 5
  • Hsa-Mir-3929 3

External Ids for MIR3929 Gene

Previous GeneCards Identifiers for MIR3929 Gene

  • GC18U900629
  • GC18M033516

Summaries for MIR3929 Gene

Entrez Gene Summary for MIR3929 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3929 Gene

MIR3929 (MicroRNA 3929) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3929 Gene

Genomics for MIR3929 Gene

Regulatory Elements for MIR3929 Gene

Enhancers for MIR3929 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH18G035934 0.7 ENCODE 0.7 0.0 -41 0.3 GTF2F1 TBP SREBF2 JUN MAX CEBPG FOSL1 GATA3 POLR3A FOS LOC105372066 MIR187 C18orf21 RPRD1A MIR3929 GC18P035965
GH18G035949 1.1 Ensembl ENCODE 0.4 -16.2 -16246 1.2 RAD21 YY1 GLIS2 ZNF143 ZNF654 REST ZBTB33 PRDM1 MYC CTCF LOC105372066 C18orf21 RPRD1A MIR3929 GC18P035965
GH18G035938 0.4 ENCODE 0.7 -4.3 -4251 0.2 FOS TRIM28 C18orf21 MIR187 MIR3929 GC18P035965
GH18G035939 0.5 ENCODE 0.4 -5.3 -5313 0.9 CTCF PRDM1 RAD21 LOC105372066 C18orf21 MIR187 MIR3929 GC18P035965
GH18G035911 0.2 Ensembl 0.3 +21.9 21942 0.8 LOC105372066 C18orf21 MIR187 MIR3929
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3929 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3929 Gene

Chromosome:
18
Start:
35,934,088 bp from pter
End:
35,934,142 bp from pter
Size:
55 bases
Orientation:
Minus strand

Genomic View for MIR3929 Gene

Genes around MIR3929 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3929 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3929 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3929 Gene

ORGUL Member Location for MIR3929 Gene

ORGUL Member Location for MIR3929 gene

Proteins for MIR3929 Gene

Post-translational modifications for MIR3929 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3929 Gene

Domains & Families for MIR3929 Gene

Gene Families for MIR3929 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3929: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3929 Gene

Function for MIR3929 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3929 Gene

Localization for MIR3929 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3929 Gene

Pathways & Interactions for MIR3929 Gene

SuperPathways for MIR3929 Gene

No Data Available

Interacting Proteins for MIR3929 Gene

Gene Ontology (GO) - Biological Process for MIR3929 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3929 Gene

Transcripts for MIR3929 Gene

mRNA/cDNA for MIR3929 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3929 Gene

No ASD Table

Relevant External Links for MIR3929 Gene

GeneLoc Exon Structure for
MIR3929
ECgene alternative splicing isoforms for
MIR3929

Expression for MIR3929 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3929 Gene:

MIR3929
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3929 Gene

Orthologs for MIR3929 Gene

Evolution for MIR3929 Gene

ENSEMBL:
Gene Tree for MIR3929 (if available)
TreeFam:
Gene Tree for MIR3929 (if available)

No data available for Orthologs for MIR3929 Gene

Paralogs for MIR3929 Gene

No data available for Paralogs for MIR3929 Gene

Variants for MIR3929 Gene

Sequence variations from dbSNP and Humsavar for MIR3929 Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type
rs1000646277 -- 35,933,948(+) CTCAG(G/T)CTCAA downstream-variant-500B
rs1001069857 -- 35,935,961(+) AGTCT(A/C)GCCCA upstream-variant-2KB
rs1003506816 -- 35,934,082(+) TCCCG(G/T)GCTCA downstream-variant-500B
rs1004233251 -- 35,935,829(+) TCAGC(A/C)TTGTC upstream-variant-2KB
rs1004996760 -- 35,935,599(+) GCAAA(A/C)CTCTG upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3929 Gene

Variant ID Type Subtype PubMed ID
nsv1065113 CNV loss 25217958

Relevant External Links for MIR3929 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3929

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3929 Gene

Disorders for MIR3929 Gene

Relevant External Links for MIR3929

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3929

No disorders were found for MIR3929 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3929 Gene

Publications for MIR3929 Gene

  1. Discovery of novel microRNAs in female reproductive tract using next generation sequencing. (PMID: 20224791) Creighton C.J. … Gunaratne P.H. (PLoS ONE 2010) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3929 Gene

Sources for MIR3929 Gene

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