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Aliases for MIR3927 Gene

Subcategory (RNA class) for MIR3927 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR3927 Gene

  • MicroRNA 3927 2 3 5
  • Hsa-Mir-3927 3

External Ids for MIR3927 Gene

Previous GeneCards Identifiers for MIR3927 Gene

  • GC09U901644
  • GC09M112275

Summaries for MIR3927 Gene

Entrez Gene Summary for MIR3927 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3927 Gene

MIR3927 (MicroRNA 3927) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3927 Gene

Genomics for MIR3927 Gene

Regulatory Elements for MIR3927 Gene

Enhancers for MIR3927 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G109507 1.2 ENCODE dbSUPER 0.7 +3.9 3920 1.1 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF48 YY1 FOS ZHX2 PTPN3 YBX1P6 PALM2 MIR3927 GC09P109498
GH09G109506 0.9 ENCODE 0.4 +5.3 5270 0.2 ELF3 FOXA2 ARID4B RAD21 RARA YY1 ZNF263 NR2F2 KAT8 RAD51 MIR3927 GC09P109498
GH09G109520 0.8 ENCODE 0.4 -9.3 -9281 0.5 CTCF PKNOX1 WRNIP1 TEAD4 ARID4B ZNF2 RAD21 CHAMP1 ZKSCAN1 RFX5 MIR3927 YBX1P6
GH09G109521 0.7 ENCODE 0.4 -10.7 -10651 1.5 ZNF280D CBX3 HLF ZBTB7B CHAMP1 CBX1 ZNF610 ZNF585B CBX5 TRIM24 YBX1P6 PTPN3 PALM2 EPB41L4B MIR3927
GH09G109518 0.6 ENCODE 0.4 -6.6 -6641 0.2 MAX RAD21 FOXA1 YY1 JUND ATF3 GLIS1 ZBTB33 HNF4A PTPN3 EPB41L4B YBX1P6 MIR3927
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3927 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3927 Gene

Chromosome:
9
Start:
109,511,475 bp from pter
End:
109,511,545 bp from pter
Size:
71 bases
Orientation:
Minus strand

Genomic View for MIR3927 Gene

Genes around MIR3927 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3927 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3927 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3927 Gene

ORGUL Member Location for MIR3927 Gene

ORGUL Member Location for MIR3927 gene

Proteins for MIR3927 Gene

Post-translational modifications for MIR3927 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3927 Gene

Domains & Families for MIR3927 Gene

Gene Families for MIR3927 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3927: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3927 Gene

Function for MIR3927 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3927 Gene

Localization for MIR3927 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3927 Gene

Pathways & Interactions for MIR3927 Gene

SuperPathways for MIR3927 Gene

No Data Available

Interacting Proteins for MIR3927 Gene

Gene Ontology (GO) - Biological Process for MIR3927 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3927 Gene

Transcripts for MIR3927 Gene

mRNA/cDNA for MIR3927 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3927 Gene

No ASD Table

Relevant External Links for MIR3927 Gene

GeneLoc Exon Structure for
MIR3927
ECgene alternative splicing isoforms for
MIR3927

Expression for MIR3927 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3927 Gene:

MIR3927
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3927 Gene

Orthologs for MIR3927 Gene

Evolution for MIR3927 Gene

ENSEMBL:
Gene Tree for MIR3927 (if available)
TreeFam:
Gene Tree for MIR3927 (if available)

No data available for Orthologs for MIR3927 Gene

Paralogs for MIR3927 Gene

No data available for Paralogs for MIR3927 Gene

Variants for MIR3927 Gene

Sequence variations from dbSNP and Humsavar for MIR3927 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1000499615 -- 109,513,095(+) CCTCA(A/G)CCTCC intron-variant, upstream-variant-2KB
rs1003906034 -- 109,511,040(+) TCCCA(A/G)CAACA intron-variant, downstream-variant-500B
rs1006168783 -- 109,511,630(+) CCAGC(C/G)AGGCC intron-variant, upstream-variant-2KB
rs1006246941 -- 109,512,660(+) ATAAG(C/T)ATGAC intron-variant, upstream-variant-2KB
rs1006382766 -- 109,512,283(+) ACACT(C/G)TACAT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3927 Gene

Variant ID Type Subtype PubMed ID
esv2759709 CNV loss 17122850

Relevant External Links for MIR3927 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3927

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3927 Gene

Disorders for MIR3927 Gene

Relevant External Links for MIR3927

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3927

No disorders were found for MIR3927 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3927 Gene

Publications for MIR3927 Gene

  1. Deep sequencing of small RNAs from human skin reveals major alterations in the psoriasis miRNAome. (PMID: 21807764) Joyce C.E. … Bowcock A.M. (Hum. Mol. Genet. 2011) 3 64
  2. Discovery of novel microRNAs in female reproductive tract using next generation sequencing. (PMID: 20224791) Creighton C.J. … Gunaratne P.H. (PLoS ONE 2010) 3 64
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3927 Gene

Sources for MIR3927 Gene

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