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Aliases for MIR3925 Gene

Subcategory (RNA class) for MIR3925 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR3925 Gene

  • MicroRNA 3925 2 3 5
  • Hsa-Mir-3925 3

External Ids for MIR3925 Gene

Previous GeneCards Identifiers for MIR3925 Gene

  • GC06U902091
  • GC06M036594
  • GC06M036730
  • GC06M036727

Summaries for MIR3925 Gene

Entrez Gene Summary for MIR3925 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3925 Gene

MIR3925 (MicroRNA 3925) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3925 Gene

Genomics for MIR3925 Gene

Regulatory Elements for MIR3925 Gene

Enhancers for MIR3925 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F036622 1.1 Ensembl ENCODE 0.8 -1.5 -1475 4.0 HDGF PKNOX1 MLX ARNT SIN3A ARID4B ZNF2 SLC30A9 GLIS2 ZNF143 CDKN1A RAB44 ENSG00000251864 LAP3P2 CMTR1 KCTD20 PI16 C6orf89 MIR3925 LOC105375038
GH06F036618 0.6 Ensembl 0.8 +3.6 3611 1.0 SOX13 HDAC1 ESRRA ATF1 ZNF316 GATA2 SCRT2 NR2F6 MAFK HES1 LAP3P2 ENSG00000251864 CDKN1A RAB44 PI16 C6orf89 KCTD20 MIR3925 SRSF3
GH06F036614 0.9 Ensembl ENCODE 0.4 +6.1 6079 3.3 PKNOX1 ARID4B SIN3A ZNF121 ZNF143 ZNF207 FOS ZHX2 MXD4 REST LAP3P2 ENSG00000251864 CDKN1A RNU1-88P RAB44 KCTD20 PI16 C6orf89 FGD2 MIR3925
GH06F036626 0.9 Ensembl ENCODE 0.4 -6.2 -6189 3.8 HDGF ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 ZNF766 ZNF207 RNU1-88P LAP3P2 RN7SL502P ETV7 KCTD20 ENSG00000237719 CMTR1 STK38 MAPK14 MIR3925
GH06F036633 1 Ensembl ENCODE 0.4 -11.7 -11680 1.2 ELF3 ZFP64 FEZF1 RAD21 ZNF2 RARA ZNF263 SMAD5 PPARG NR2F2 ETV7 KCTD20 STK38 LOC105375038 MIR3925
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MIR3925 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3925 Gene

Chromosome:
6
Start:
36,622,436 bp from pter
End:
36,622,512 bp from pter
Size:
77 bases
Orientation:
Minus strand

Genomic View for MIR3925 Gene

Genes around MIR3925 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3925 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3925 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3925 Gene

ORGUL Member Location for MIR3925 Gene

ORGUL Member Location for MIR3925 gene

Proteins for MIR3925 Gene

Post-translational modifications for MIR3925 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3925 Gene

Domains & Families for MIR3925 Gene

Gene Families for MIR3925 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3925: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3925 Gene

Function for MIR3925 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3925 Gene

Localization for MIR3925 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3925 Gene

Pathways & Interactions for MIR3925 Gene

SuperPathways for MIR3925 Gene

No Data Available

Interacting Proteins for MIR3925 Gene

Gene Ontology (GO) - Biological Process for MIR3925 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3925 Gene

Transcripts for MIR3925 Gene

mRNA/cDNA for MIR3925 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3925 Gene

No ASD Table

Relevant External Links for MIR3925 Gene

GeneLoc Exon Structure for
MIR3925
ECgene alternative splicing isoforms for
MIR3925

Expression for MIR3925 Gene

mRNA expression in normal human tissues for MIR3925 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3925 Gene:

MIR3925
genes like me logo Genes that share expression patterns with MIR3925: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR3925 Gene

Orthologs for MIR3925 Gene

Evolution for MIR3925 Gene

ENSEMBL:
Gene Tree for MIR3925 (if available)
TreeFam:
Gene Tree for MIR3925 (if available)

No data available for Orthologs for MIR3925 Gene

Paralogs for MIR3925 Gene

No data available for Paralogs for MIR3925 Gene

Variants for MIR3925 Gene

Sequence variations from dbSNP and Humsavar for MIR3925 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs111414867 -- 36,622,126(+) ACACC(C/T)GGCTA downstream-variant-500B
rs111494158 -- 36,623,978(+) GGGAA(A/C)ATATA upstream-variant-2KB
rs113878692 -- 36,622,562(+) CTCAG(C/T)GAAAA upstream-variant-2KB
rs114516278 -- 36,623,614(+) TCACA(A/T)GGGGG upstream-variant-2KB
rs115816866 -- 36,623,352(+) GGTCC(A/T)GCCAT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3925 Gene

Variant ID Type Subtype PubMed ID
esv3608709 CNV loss 21293372
nsv1015689 CNV gain 25217958

Relevant External Links for MIR3925 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3925

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3925 Gene

Disorders for MIR3925 Gene

Relevant External Links for MIR3925

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3925

No disorders were found for MIR3925 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3925 Gene

Publications for MIR3925 Gene

  1. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H. … Rovira C. (Cancer Res. 2011) 3 64
  2. Discovery of novel microRNAs in female reproductive tract using next generation sequencing. (PMID: 20224791) Creighton C.J. … Gunaratne P.H. (PLoS ONE 2010) 3 64
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3925 Gene

Sources for MIR3925 Gene

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