Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MIR3925 Gene

Subcategory (RNA class) for MIR3925 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR3925 Gene

  • MicroRNA 3925 2 3 5
  • Hsa-Mir-3925 3

External Ids for MIR3925 Gene

Previous GeneCards Identifiers for MIR3925 Gene

  • GC06U902091
  • GC06M036594
  • GC06M036730
  • GC06M036727
  • GC06M037031

Summaries for MIR3925 Gene

Entrez Gene Summary for MIR3925 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3925 Gene

MIR3925 (MicroRNA 3925) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3925 Gene

Genomics for MIR3925 Gene

Regulatory Elements for MIR3925 Gene

Enhancers for MIR3925 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G036623 1.6 Ensembl ENCODE dbSUPER 0.7 -2.0 -2024 2.9 HDGF PKNOX1 MLX ARNT SIN3A ARID4B ZNF2 SLC30A9 ZNF143 ZNF207 CDKN1A RAB44 LAP3P2 ENSG00000251864 KCTD20 PI16 C6orf89 MIR3925 LOC105375038
GH06G036592 3 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +25.1 25094 10.7 MLX CREB3L1 ZFP64 DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF263 SP3 KCTD20 CDKN1A RAB44 STK38 TBC1D22B ETV7 ENSG00000251864 LAP3P2 ENSG00000237719 CMTR1
GH06G036622 1 Ensembl dbSUPER 0.7 -0.1 -105 0.8 TFAP4 ZNF10 MAX RAD21 TEAD3 FOSL1 JUND IKZF1 CUX1 FOSL2 ENSG00000251864 LAP3P2 CDKN1A RAB44 PI16 C6orf89 MIR3925 LOC105375038
GH06G036627 1.5 Ensembl ENCODE dbSUPER 0.4 -6.1 -6141 2.6 HDGF ARID4B SIN3A ZNF2 ZNF121 PAF1 NCOA1 PPARG ZFP41 NFIL3 CMTR1 TBC1D22B KCTD20 STK38 ETV7 MIR3925 LOC105375038
GH06G036614 1.4 Ensembl ENCODE dbSUPER 0.4 +7.2 7223 1.0 HDAC1 ARID4B RAD21 ZNF121 ZNF143 MIXL1 ZNF654 ZNF362 ZHX2 MXD4 LAP3P2 ENSG00000251864 CDKN1A RNU1-88P RAB44 KCTD20 PI16 C6orf89 FGD2 MIR3925
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3925 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3925 Gene

Chromosome:
6
Start:
36,622,436 bp from pter
End:
36,622,512 bp from pter
Size:
77 bases
Orientation:
Minus strand

Genomic View for MIR3925 Gene

Genes around MIR3925 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3925 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3925 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3925 Gene

ORGUL Member Location for MIR3925 Gene

ORGUL Member Location for MIR3925 gene

Proteins for MIR3925 Gene

Post-translational modifications for MIR3925 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3925 Gene

Domains & Families for MIR3925 Gene

Gene Families for MIR3925 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3925: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3925 Gene

Function for MIR3925 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3925 Gene

Localization for MIR3925 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3925 Gene

Pathways & Interactions for MIR3925 Gene

SuperPathways for MIR3925 Gene

No Data Available

Interacting Proteins for MIR3925 Gene

Gene Ontology (GO) - Biological Process for MIR3925 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3925 Gene

Drugs & Compounds for MIR3925 Gene

No Compound Related Data Available

Transcripts for MIR3925 Gene

mRNA/cDNA for MIR3925 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3925 Gene

No ASD Table

Relevant External Links for MIR3925 Gene

GeneLoc Exon Structure for
MIR3925
ECgene alternative splicing isoforms for
MIR3925

Expression for MIR3925 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3925 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3925 Gene:

MIR3925
genes like me logo Genes that share expression patterns with MIR3925: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3925 Gene

Orthologs for MIR3925 Gene

Evolution for MIR3925 Gene

ENSEMBL:
Gene Tree for MIR3925 (if available)
TreeFam:
Gene Tree for MIR3925 (if available)

No data available for Orthologs for MIR3925 Gene

Paralogs for MIR3925 Gene

No data available for Paralogs for MIR3925 Gene

Variants for MIR3925 Gene

Sequence variations from dbSNP and Humsavar for MIR3925 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000175782 -- 36,623,633(+) GGAAG(A/G)AAACA upstream-variant-2KB
rs1001800078 -- 36,623,195(+) AGGCC(C/T)GGGTG upstream-variant-2KB
rs1003413890 -- 36,623,768(+) TTAAA(A/C)ATGAA upstream-variant-2KB
rs1004299674 -- 36,624,202(+) AGGGG(C/G/T)AGAGC upstream-variant-2KB
rs1004415643 -- 36,623,981(+) AACAT(A/C)TATGT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3925 Gene

Variant ID Type Subtype PubMed ID
esv3608709 CNV loss 21293372
nsv1015689 CNV gain 25217958

Relevant External Links for MIR3925 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3925

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3925 Gene

Disorders for MIR3925 Gene

Relevant External Links for MIR3925

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3925

No disorders were found for MIR3925 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3925 Gene

Publications for MIR3925 Gene

  1. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H. … Rovira C. (Cancer Res. 2011) 3 64
  2. Discovery of novel microRNAs in female reproductive tract using next generation sequencing. (PMID: 20224791) Creighton C.J. … Gunaratne P.H. (PLoS ONE 2010) 3 64
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3925 Gene

Sources for MIR3925 Gene

Content
Loading form....