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Aliases for MIR3923 Gene

Subcategory (RNA class) for MIR3923 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3923 Gene

  • MicroRNA 3923 2 3 5
  • Hsa-Mir-3923 3

External Ids for MIR3923 Gene

Previous GeneCards Identifiers for MIR3923 Gene

  • GC03U901715

Summaries for MIR3923 Gene

Entrez Gene Summary for MIR3923 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3923 Gene

MIR3923 (MicroRNA 3923) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3923 Gene

Genomics for MIR3923 Gene

Regulatory Elements for MIR3923 Gene

Enhancers for MIR3923 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F079507 0.3 FANTOM5 0.8 +0.0 44 0.1 ROBO1 MIR3923
GH03F079490 0.6 Ensembl ENCODE 0.3 -17.2 -17153 1.2 CTCF ROBO1 MIR3923 LOC101927374
GH03F079468 0.4 ENCODE 0.3 -39.9 -39942 0.2 JUND MIR3923 LOC101927374
GH03F079467 0.4 Ensembl 0.2 -40.2 -40187 0.2 JUND MIR3923 LOC101927374
GH03F079412 0.5 FANTOM5 0.1 -95.2 -95171 0.4 JUND ROBO1 LOC101927374 MIR3923
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3923 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3923 Gene

Chromosome:
3
Start:
79,507,887 bp from pter
End:
79,507,969 bp from pter
Size:
83 bases
Orientation:
Plus strand

Genomic View for MIR3923 Gene

Genes around MIR3923 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3923 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3923 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3923 Gene

Proteins for MIR3923 Gene

Post-translational modifications for MIR3923 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3923 Gene

Domains & Families for MIR3923 Gene

Gene Families for MIR3923 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3923: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3923 Gene

Function for MIR3923 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3923 Gene

Localization for MIR3923 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3923 Gene

Pathways & Interactions for MIR3923 Gene

SuperPathways for MIR3923 Gene

No Data Available

Interacting Proteins for MIR3923 Gene

Gene Ontology (GO) - Biological Process for MIR3923 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3923 Gene

Transcripts for MIR3923 Gene

mRNA/cDNA for MIR3923 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3923 Gene

No ASD Table

Relevant External Links for MIR3923 Gene

GeneLoc Exon Structure for
MIR3923
ECgene alternative splicing isoforms for
MIR3923

Expression for MIR3923 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3923 Gene:

MIR3923
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR3923 Gene

Orthologs for MIR3923 Gene

Evolution for MIR3923 Gene

ENSEMBL:
Gene Tree for MIR3923 (if available)
TreeFam:
Gene Tree for MIR3923 (if available)

No data available for Orthologs for MIR3923 Gene

Paralogs for MIR3923 Gene

No data available for Paralogs for MIR3923 Gene

Variants for MIR3923 Gene

Sequence variations from dbSNP and Humsavar for MIR3923 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10154835 -- 79,506,689(+) CCACC(C/T)GCCTT intron-variant, upstream-variant-2KB
rs111509626 -- 79,506,470(+) TTTTT(G/T)TTTGA intron-variant, upstream-variant-2KB
rs114048702 -- 79,507,035(+) AATCA(A/G)TCAAC intron-variant, upstream-variant-2KB
rs114104851 -- 79,506,177(+) GATTT(C/T)ATGAT intron-variant, upstream-variant-2KB
rs114922744 -- 79,506,746(+) CTGAG(A/G)CAAAG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3923 Gene

Variant ID Type Subtype PubMed ID
esv2422412 CNV deletion 17116639
nsv834747 CNV gain 17160897

Relevant External Links for MIR3923 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3923

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3923 Gene

Disorders for MIR3923 Gene

Relevant External Links for MIR3923

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3923

No disorders were found for MIR3923 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3923 Gene

Publications for MIR3923 Gene

  1. Discovery of novel microRNAs in female reproductive tract using next generation sequencing. (PMID: 20224791) Creighton C.J. … Gunaratne P.H. (PLoS ONE 2010) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3923 Gene

Sources for MIR3923 Gene

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