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Aliases for MIR3921 Gene

Subcategory (RNA class) for MIR3921 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR3921 Gene

  • MicroRNA 3921 2 3 5
  • Hsa-Mir-3921 3

External Ids for MIR3921 Gene

Previous GeneCards Identifiers for MIR3921 Gene

  • GC03U901694
  • GC03M099685

Summaries for MIR3921 Gene

Entrez Gene Summary for MIR3921 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3921 Gene

MIR3921 (MicroRNA 3921) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3921 Gene

Genomics for MIR3921 Gene

Regulatory Elements for MIR3921 Gene

Enhancers for MIR3921 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G099964 1.2 Ensembl ENCODE dbSUPER 0.7 -2.3 -2314 4.7 CTCF ZNF654 TRIM22 REST RAD21 FOXA1 FOSL1 CTBP1 PRDM6 GATA3 FILIP1L TMEM45A MIR3921 GC03M099966
GH03G099962 1.1 Ensembl ENCODE dbSUPER 0.7 +1.6 1581 1.0 ZFHX2 PRDM6 HLF ZNF10 FOS SP7 TMEM45A GC03M099958 MIR3921
GH03G099959 0.5 dbSUPER 0.7 +4.1 4116 1.0 SOX5 SOX13 ZMYM3 PRDM1 FOXP1 FILIP1L TMEM45A GC03M099958 MIR3921
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3921 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3921 Gene

Chromosome:
3
Start:
99,964,314 bp from pter
End:
99,964,398 bp from pter
Size:
85 bases
Orientation:
Minus strand

Genomic View for MIR3921 Gene

Genes around MIR3921 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3921 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3921 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3921 Gene

ORGUL Member Location for MIR3921 Gene

ORGUL Member Location for MIR3921 gene

Proteins for MIR3921 Gene

Post-translational modifications for MIR3921 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3921 Gene

Domains & Families for MIR3921 Gene

Gene Families for MIR3921 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3921: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3921 Gene

Function for MIR3921 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3921 Gene

Localization for MIR3921 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3921 Gene

Pathways & Interactions for MIR3921 Gene

SuperPathways for MIR3921 Gene

No Data Available

Interacting Proteins for MIR3921 Gene

Gene Ontology (GO) - Biological Process for MIR3921 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3921 Gene

Drugs & Compounds for MIR3921 Gene

No Compound Related Data Available

Transcripts for MIR3921 Gene

mRNA/cDNA for MIR3921 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3921 Gene

No ASD Table

Relevant External Links for MIR3921 Gene

GeneLoc Exon Structure for
MIR3921
ECgene alternative splicing isoforms for
MIR3921

Expression for MIR3921 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3921 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3921 Gene:

MIR3921
genes like me logo Genes that share expression patterns with MIR3921: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3921 Gene

Orthologs for MIR3921 Gene

Evolution for MIR3921 Gene

ENSEMBL:
Gene Tree for MIR3921 (if available)
TreeFam:
Gene Tree for MIR3921 (if available)

No data available for Orthologs for MIR3921 Gene

Paralogs for MIR3921 Gene

No data available for Paralogs for MIR3921 Gene

Variants for MIR3921 Gene

Sequence variations from dbSNP and Humsavar for MIR3921 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1001863030 -- 99,965,961(+) TCCCC(A/G)TATGT intron-variant, upstream-variant-2KB
rs1002977793 -- 99,964,135(+) ACTTA(C/T)ATGCT intron-variant, downstream-variant-500B
rs1003483607 -- 99,965,653(+) AACTC(A/G)GAGAT intron-variant, upstream-variant-2KB
rs1007097526 -- 99,965,326(+) GTTGG(C/T)CTGTG intron-variant, upstream-variant-2KB
rs1007456107 -- 99,965,040(+) AAATT(A/G)TGATA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3921 Gene

Variant ID Type Subtype PubMed ID
dgv4829n100 CNV loss 25217958

Relevant External Links for MIR3921 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3921

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3921 Gene

Disorders for MIR3921 Gene

Relevant External Links for MIR3921

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3921

No disorders were found for MIR3921 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3921 Gene

Publications for MIR3921 Gene

  1. Discovery of novel microRNAs in female reproductive tract using next generation sequencing. (PMID: 20224791) Creighton C.J. … Gunaratne P.H. (PLoS ONE 2010) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3921 Gene

Sources for MIR3921 Gene

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