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Aliases for MIR3920 Gene

Subcategory (RNA class) for MIR3920 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR3920 Gene

  • MicroRNA 3920 2 3 5
  • Hsa-Mir-3920 3

External Ids for MIR3920 Gene

Previous GeneCards Identifiers for MIR3920 Gene

  • GC11U901784
  • GC11M101392

Summaries for MIR3920 Gene

Entrez Gene Summary for MIR3920 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3920 Gene

MIR3920 (MicroRNA 3920) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3920 Gene

Genomics for MIR3920 Gene

Regulatory Elements for MIR3920 Gene

Enhancers for MIR3920 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F101521 0.6 ENCODE 0.8 -2.1 -2089 0.9 MIR3920 LOC100127938
GH11F101516 0.2 ENCODE 0.8 +3.2 3232 0.3 SMARCA4 POLR2A MIR3920 LOC105369458
GH11F101517 0.5 FANTOM5 0.8 +3.8 3795 0.0 TRPC6 MIR3920 LOC105369458
GH11F101553 0.9 Ensembl ENCODE 0.3 -34.6 -34586 2.2 USF2 MAX TBX21 RAD51 CBX5 IKZF1 MAFK SPI1 TRPC6 LOC100127938 MIR3920
GH11F101487 0.4 ENCODE 0.3 +32.0 32008 1.2 JUND FOS MIR3920 LOC105369458
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MIR3920 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3920 Gene

Chromosome:
11
Start:
101,519,820 bp from pter
End:
101,519,905 bp from pter
Size:
86 bases
Orientation:
Minus strand

Genomic View for MIR3920 Gene

Genes around MIR3920 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3920 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3920 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3920 Gene

ORGUL Member Location for MIR3920 Gene

ORGUL Member Location for MIR3920 gene

Proteins for MIR3920 Gene

Post-translational modifications for MIR3920 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3920 Gene

Domains & Families for MIR3920 Gene

Gene Families for MIR3920 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3920: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3920 Gene

Function for MIR3920 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3920 Gene

Localization for MIR3920 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3920 Gene

Pathways & Interactions for MIR3920 Gene

SuperPathways for MIR3920 Gene

No Data Available

Interacting Proteins for MIR3920 Gene

Gene Ontology (GO) - Biological Process for MIR3920 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3920 Gene

Transcripts for MIR3920 Gene

mRNA/cDNA for MIR3920 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3920 Gene

No ASD Table

Relevant External Links for MIR3920 Gene

GeneLoc Exon Structure for
MIR3920
ECgene alternative splicing isoforms for
MIR3920

Expression for MIR3920 Gene

mRNA expression in normal human tissues for MIR3920 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3920 Gene:

MIR3920
genes like me logo Genes that share expression patterns with MIR3920: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR3920 Gene

Orthologs for MIR3920 Gene

Evolution for MIR3920 Gene

ENSEMBL:
Gene Tree for MIR3920 (if available)
TreeFam:
Gene Tree for MIR3920 (if available)

No data available for Orthologs for MIR3920 Gene

Paralogs for MIR3920 Gene

No data available for Paralogs for MIR3920 Gene

Variants for MIR3920 Gene

Sequence variations from dbSNP and Humsavar for MIR3920 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs10675951 -- 101,519,321(+) ACCTA(-/CTA)TGTAC intron-variant, downstream-variant-500B
rs10895129 -- 101,521,108(+) gttaa(C/T)agcca intron-variant, upstream-variant-2KB
rs111352129 -- 101,520,925(+) GCATT(C/T)GCTCA intron-variant, upstream-variant-2KB
rs111656686 -- 101,520,309(+) CACCA(C/T)AATTG intron-variant, upstream-variant-2KB
rs11224815 -- 101,519,740(+) cacct(C/T)ttgct intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for MIR3920 Gene

Variant ID Type Subtype PubMed ID
nsv556131 CNV gain 21841781

Relevant External Links for MIR3920 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3920

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3920 Gene

Disorders for MIR3920 Gene

Relevant External Links for MIR3920

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3920

No disorders were found for MIR3920 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3920 Gene

Publications for MIR3920 Gene

  1. Discovery of novel microRNAs in female reproductive tract using next generation sequencing. (PMID: 20224791) Creighton C.J. … Gunaratne P.H. (PLoS ONE 2010) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3920 Gene

Sources for MIR3920 Gene

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