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Aliases for MIR3918 Gene

Subcategory (RNA class) for MIR3918 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR3918 Gene

  • MicroRNA 3918 2 3 5
  • Hsa-Mir-3918 3
  • Mir-3918 3

External Ids for MIR3918 Gene

Previous GeneCards Identifiers for MIR3918 Gene

  • GC06U902095
  • GC06M159193
  • GC06M159195
  • GC06M159198

Summaries for MIR3918 Gene

Entrez Gene Summary for MIR3918 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3918 Gene

MIR3918 (MicroRNA 3918) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3918 Gene

Genomics for MIR3918 Gene

Regulatory Elements for MIR3918 Gene

Enhancers for MIR3918 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G158761 1.2 ENCODE dbSUPER 0.7 +1.3 1340 3.6 PKNOX1 ATF1 CREB3L1 ARNT E2F7 TCF12 ZNF766 CBX5 ELK1 GATA2 EZR LOC442272 RNU6-293P ENSG00000229502 TMEM181 MIR3918 AMZ2P2
GH06G158750 1.3 Ensembl ENCODE dbSUPER 0.4 +12.8 12752 3.0 CTCF RB1 EBF1 ZIC2 RAD21 ZNF101 POLR2A SCRT2 ZNF143 SMC3 LOC442272 RNU6-293P TMEM181 MIR3918 AMZ2P2
GH06G158759 0.7 ENCODE dbSUPER 0.7 +4.3 4290 1.0 KLF1 POLR2A MNT EZR MIR3918 AMZ2P2
GH06G158758 1 ENCODE dbSUPER 0.4 +6.2 6180 0.2 BCOR TAL1 ZMYM3 ZIC2 RAD21 TCF12 HIC1 GLIS2 POLR2A PATZ1 RNU6-293P LOC442272 MIR3918 AMZ2P2
GH06G158736 1.3 Ensembl ENCODE dbSUPER 0.3 +27.0 27048 1.9 BCOR ESRRA JUN ZMYM3 CEBPG FOSL1 ZNF316 POLR2A ADNP HNF4G LOC442272 RNU6-293P RSPH3 EZR AMZ2P2 MIR3918
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3918 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3918 Gene

Chromosome:
6
Start:
158,764,661 bp from pter
End:
158,764,753 bp from pter
Size:
93 bases
Orientation:
Minus strand

Genomic View for MIR3918 Gene

Genes around MIR3918 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3918 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3918 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3918 Gene

ORGUL Member Location for MIR3918 Gene

ORGUL Member Location for MIR3918 gene

Proteins for MIR3918 Gene

Post-translational modifications for MIR3918 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3918 Gene

Domains & Families for MIR3918 Gene

Gene Families for MIR3918 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3918: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3918 Gene

Function for MIR3918 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3918 Gene

Localization for MIR3918 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3918 Gene

Pathways & Interactions for MIR3918 Gene

SuperPathways for MIR3918 Gene

No Data Available

Interacting Proteins for MIR3918 Gene

Gene Ontology (GO) - Biological Process for MIR3918 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3918 Gene

Drugs & Compounds for MIR3918 Gene

No Compound Related Data Available

Transcripts for MIR3918 Gene

mRNA/cDNA for MIR3918 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3918 Gene

No ASD Table

Relevant External Links for MIR3918 Gene

GeneLoc Exon Structure for
MIR3918
ECgene alternative splicing isoforms for
MIR3918

Expression for MIR3918 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3918 Gene

mRNA differential expression in normal tissues according to GTEx for MIR3918 Gene

This gene is overexpressed in Whole Blood (x15.2).

NURSA nuclear receptor signaling pathways regulating expression of MIR3918 Gene:

MIR3918
genes like me logo Genes that share expression patterns with MIR3918: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3918 Gene

Orthologs for MIR3918 Gene

Evolution for MIR3918 Gene

ENSEMBL:
Gene Tree for MIR3918 (if available)
TreeFam:
Gene Tree for MIR3918 (if available)

No data available for Orthologs for MIR3918 Gene

Paralogs for MIR3918 Gene

No data available for Paralogs for MIR3918 Gene

Variants for MIR3918 Gene

Sequence variations from dbSNP and Humsavar for MIR3918 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000221112 -- 158,764,266(+) CAGAA(C/T)TCCAG intron-variant, downstream-variant-500B
rs1000444177 -- 158,765,923(+) AACAA(-/ACAAAC)ACAAG upstream-variant-2KB, cds-indel
rs1001049983 -- 158,766,664(+) TGCTC(C/G)CAGCA downstream-variant-500B, upstream-variant-2KB, utr-variant-3-prime
rs1001179739 -- 158,765,327(+) AGCCT(C/T)CCAAG downstream-variant-500B, upstream-variant-2KB, utr-variant-3-prime
rs1002042140 -- 158,765,635(+) TGTAC(C/T)CCCAG downstream-variant-500B, upstream-variant-2KB, utr-variant-3-prime

Relevant External Links for MIR3918 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3918

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR3918 Gene

Disorders for MIR3918 Gene

Relevant External Links for MIR3918

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3918

No disorders were found for MIR3918 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3918 Gene

Publications for MIR3918 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  2. Discovery of novel microRNAs in female reproductive tract using next generation sequencing. (PMID: 20224791) Creighton C.J. … Gunaratne P.H. (PLoS ONE 2010) 3 64
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3918 Gene

Sources for MIR3918 Gene

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