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Aliases for MIR3913-2 Gene

Subcategory (RNA class) for MIR3913-2 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3913-2 Gene

  • MicroRNA 3913-2 2 3 5
  • Hsa-Mir-3913-2 3
  • Mir-3913-2 3

External Ids for MIR3913-2 Gene

Previous GeneCards Identifiers for MIR3913-2 Gene

  • GC12U901514
  • GC12M069979
  • GC12P069982

Summaries for MIR3913-2 Gene

Entrez Gene Summary for MIR3913-2 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3913-2 Gene

MIR3913-2 (MicroRNA 3913-2) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3913-2 Gene

Genomics for MIR3913-2 Gene

Regulatory Elements for MIR3913-2 Gene

Enhancers for MIR3913-2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G069568 1 Ensembl ENCODE 0.4 -14.6 -14640 2.5 CTCF ZNF654 NRF1 TRIM22 REST RAD21 RELA RFX5 ZNF664 MAFF FRS2 LYZ MIR3913-2 GC12P069484 GC12P069483
GH12G069553 1.1 Ensembl ENCODE 0.3 -29.5 -29520 3.2 PKNOX1 NFIB FEZF1 RARA ZNF121 ZNF366 FOS EGR2 ZNF680 NFIC FRS2 CCT2 MIR3913-2 GC12P069483 GC12P069484
GH12G069533 1.1 Ensembl ENCODE 0.2 -49.7 -49655 3.1 HDGF PKNOX1 WRNIP1 BMI1 FOS RELB IKZF2 EGR2 ZNF202 USF2 FRS2 MIR3913-2 GC12P069483 GC12P069484
GH12G069502 1 Ensembl ENCODE 0.2 -82.1 -82056 0.7 GFI1B INSM2 TSHZ1 ZNF394 CHD7 ZIC2 ZNF121 JUND PRDM6 ZNF366 FRS2 GC12P069484 GC12P069483 MIR3913-2
GH12G069526 0.9 Ensembl ENCODE 0.2 -56.6 -56580 2.4 ZNF362 JUNB FEZF1 ZNF384 DPF2 ZNF664 PRDM6 SCRT2 TCF7 FOS FRS2 LYZ CCT2 YEATS4 GC12P069483 GC12P069484 MIR3913-2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3913-2 on UCSC Golden Path with GeneCards custom track

Promoters for MIR3913-2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000053778 878 1600 HDGF PKNOX1 MLX CREB3L1 ARNT AGO1 WRNIP1 ARID4B SIN3A DMAP1

Genomic Location for MIR3913-2 Gene

Chromosome:
12
Start:
69,584,723 bp from pter
End:
69,584,822 bp from pter
Size:
100 bases
Orientation:
Plus strand

Genomic View for MIR3913-2 Gene

Genes around MIR3913-2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3913-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3913-2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3913-2 Gene

Proteins for MIR3913-2 Gene

Post-translational modifications for MIR3913-2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3913-2 Gene

Domains & Families for MIR3913-2 Gene

Gene Families for MIR3913-2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3913-2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3913-2 Gene

Function for MIR3913-2 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3913-2 Gene

Localization for MIR3913-2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3913-2 Gene

Pathways & Interactions for MIR3913-2 Gene

SuperPathways for MIR3913-2 Gene

No Data Available

Interacting Proteins for MIR3913-2 Gene

Gene Ontology (GO) - Biological Process for MIR3913-2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3913-2 Gene

Drugs & Compounds for MIR3913-2 Gene

No Compound Related Data Available

Transcripts for MIR3913-2 Gene

mRNA/cDNA for MIR3913-2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3913-2 Gene

No ASD Table

Relevant External Links for MIR3913-2 Gene

GeneLoc Exon Structure for
MIR3913-2
ECgene alternative splicing isoforms for
MIR3913-2

Expression for MIR3913-2 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3913-2 Gene

Orthologs for MIR3913-2 Gene

Evolution for MIR3913-2 Gene

ENSEMBL:
Gene Tree for MIR3913-2 (if available)
TreeFam:
Gene Tree for MIR3913-2 (if available)

No data available for Orthologs for MIR3913-2 Gene

Paralogs for MIR3913-2 Gene

No data available for Paralogs for MIR3913-2 Gene

Variants for MIR3913-2 Gene

Sequence variations from dbSNP and Humsavar for MIR3913-2 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000790277 -- 69,582,725(+) CTGCC(C/T)GGGTG upstream-variant-2KB
rs1001110119 -- 69,584,685(+) AACAA(A/T)TTTTT downstream-variant-500B, upstream-variant-2KB
rs1001541521 -- 69,584,435(+) CCTGA(G/T)TAGCT downstream-variant-500B, upstream-variant-2KB
rs1003370257 -- 69,585,021(+) TTCTT(C/T)TGTAA downstream-variant-500B, upstream-variant-2KB
rs1006885883 -- 69,583,986(+) TCTTT(C/G)AACCA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3913-2 Gene

Variant ID Type Subtype PubMed ID
dgv1523n100 CNV gain 25217958

Relevant External Links for MIR3913-2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3913-2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3913-2 Gene

Disorders for MIR3913-2 Gene

Relevant External Links for MIR3913-2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3913-2

No disorders were found for MIR3913-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3913-2 Gene

Publications for MIR3913-2 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  2. Discovery of novel microRNAs in female reproductive tract using next generation sequencing. (PMID: 20224791) Creighton C.J. … Gunaratne P.H. (PLoS ONE 2010) 3 64
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3913-2 Gene

Sources for MIR3913-2 Gene

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