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Aliases for MIR3911 Gene

Subcategory (RNA class) for MIR3911 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3911 Gene

  • MicroRNA 3911 2 3 5
  • Hsa-Mir-3911 3
  • Mir-3911 3

External Ids for MIR3911 Gene

Previous GeneCards Identifiers for MIR3911 Gene

  • GC09U901633
  • GC09M130454

Summaries for MIR3911 Gene

Entrez Gene Summary for MIR3911 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3911 Gene

MIR3911 (MicroRNA 3911) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3911 Gene

Genomics for MIR3911 Gene

Regulatory Elements for MIR3911 Gene

Enhancers for MIR3911 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09F127689 0.9 ENCODE 0.8 +1.4 1361 0.5 PKNOX1 ATF1 SREBF2 FEZF1 RAD21 THRB RARA ZNF335 GLIS2 ZNF366 TTC16 PTRH1 STXBP1 LOC102723566 ZNF79 FAM129B ANGPTL2 URM1 SNORA65 MIR3911
GH09F127698 1.7 FANTOM5 Ensembl ENCODE 0.4 -8.9 -8882 2.7 HDGF ATF1 PKNOX1 ARNT CREB3L1 ZNF2 ZNF48 ZNF121 GLIS2 ELK1 ZNF79 CDK9 TTC16 ST6GALNAC6 STXBP1 GARNL3 PIP5KL1 SLC25A25 CFAP157 MIR3911
GH09F127694 0.6 ENCODE 0.8 -4.5 -4526 1.0 ZNF121 ZNF23 MLLT1 ZMIZ1 REST ZBTB17 FAM129B SNORA65 MIR3911 CFAP157
GH09F127682 1 ENCODE 0.4 +6.7 6722 2.5 ATF1 CREB3L1 ARID4B SIN3A GLI4 FEZF1 YY1 GLIS2 FOS DEK CFAP157 TTC16 FAM129B TOR2A MIR3911 GC09M127606
GH09F127664 0.9 ENCODE 0.3 +25.9 25882 1.2 ELF3 ARID4B KLF17 DMAP1 THRB RAD21 RARA GLIS2 THAP11 MXD4 TOR2A MIR3911 GC09M127606
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3911 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3911 Gene

Chromosome:
9
Start:
127,690,098 bp from pter
End:
127,690,840 bp from pter
Size:
743 bases
Orientation:
Minus strand

Genomic View for MIR3911 Gene

Genes around MIR3911 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3911 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3911 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3911 Gene

Proteins for MIR3911 Gene

Post-translational modifications for MIR3911 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3911 Gene

Domains & Families for MIR3911 Gene

Gene Families for MIR3911 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3911: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3911 Gene

Function for MIR3911 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3911 Gene

Localization for MIR3911 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3911 Gene

Pathways & Interactions for MIR3911 Gene

SuperPathways for MIR3911 Gene

No Data Available

Interacting Proteins for MIR3911 Gene

Gene Ontology (GO) - Biological Process for MIR3911 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3911 Gene

Transcripts for MIR3911 Gene

mRNA/cDNA for MIR3911 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3911 Gene

No ASD Table

Relevant External Links for MIR3911 Gene

GeneLoc Exon Structure for
MIR3911
ECgene alternative splicing isoforms for
MIR3911

Expression for MIR3911 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR3911 Gene

mRNA differential expression in normal tissues according to GTEx for MIR3911 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x6.3), Brain - Cerebellum (x5.8), Brain - Frontal Cortex (BA9) (x5.0), and Brain - Cortex (x4.3).

NURSA nuclear receptor signaling pathways regulating expression of MIR3911 Gene:

MIR3911
genes like me logo Genes that share expression patterns with MIR3911: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR3911 Gene

Orthologs for MIR3911 Gene

Evolution for MIR3911 Gene

ENSEMBL:
Gene Tree for MIR3911 (if available)
TreeFam:
Gene Tree for MIR3911 (if available)

No data available for Orthologs for MIR3911 Gene

Paralogs for MIR3911 Gene

No data available for Paralogs for MIR3911 Gene

Variants for MIR3911 Gene

Sequence variations from dbSNP and Humsavar for MIR3911 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs796053393 Pathogenic 127,690,798(+) CCCCA(-/C)AGAAA upstream-variant-2KB, reference, utr-variant-3-prime, frameshift-variant
rs1043384 -- 127,690,915(+) TTCCC(A/C)CCACC upstream-variant-2KB, utr-variant-3-prime
rs1043411 -- 127,692,105(+) TGAAA(A/T)ATAAT upstream-variant-2KB, utr-variant-3-prime
rs1043433 -- 127,692,274(+) CTCTC(C/T)GCTCG upstream-variant-2KB, utr-variant-3-prime
rs111287361 -- 127,690,602(+) CTCCC(A/G)GGCCT intron-variant, downstream-variant-500B

Relevant External Links for MIR3911 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3911

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR3911 Gene

Disorders for MIR3911 Gene

Relevant External Links for MIR3911

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3911

No disorders were found for MIR3911 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3911 Gene

Publications for MIR3911 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  2. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H. … Rovira C. (Cancer Res. 2011) 3 64
  3. Discovery of novel microRNAs in female reproductive tract using next generation sequencing. (PMID: 20224791) Creighton C.J. … Gunaratne P.H. (PLoS ONE 2010) 3 64
  4. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3911 Gene

Sources for MIR3911 Gene

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