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Aliases for MIR3911 Gene

Subcategory (RNA class) for MIR3911 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3911 Gene

  • MicroRNA 3911 2 3 5
  • Hsa-Mir-3911 3
  • Mir-3911 3

External Ids for MIR3911 Gene

Previous GeneCards Identifiers for MIR3911 Gene

  • GC09U901633
  • GC09M130454

Summaries for MIR3911 Gene

Entrez Gene Summary for MIR3911 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3911 Gene

MIR3911 (MicroRNA 3911) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3911 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3911 Gene

Genomics for MIR3911 Gene

GeneHancer (GH) Regulatory Elements for MIR3911 Gene

Promoters and enhancers for MIR3911 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I127689 Enhancer 0.7 ENCODE dbSUPER 550.8 +1.3 1316 0.5 MAFF ZNF316 MAFG MAFK EMSY ENSG00000279571 MIR3911 TTC16 PTRH1 STXBP1 FAM129B GC09M127606
GH09I127611 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 0.2 +78.0 78008 2.4 SIN3A ZNF48 SLC30A9 ZNF121 POLR2B GLIS2 ELK1 ATF7 KLF13 ZNF263 STXBP1 TOR2A PTRH1 GC09M127606 MIR3911
GH09I127664 Enhancer 1 ENCODE dbSUPER 0.3 +25.8 25836 1.2 ELF3 ARID4B DMAP1 THRB RARA ETS1 RCOR1 THAP11 MXD4 NR2F2 TOR2A MIR3911 GC09M127606 STXBP1
GH09I127682 Enhancer 0.7 ENCODE dbSUPER 0.4 +6.7 6677 2.5 MAFF ZNF316 DPF2 FOS MAFK EMSY CFAP157 TTC16 FAM129B TOR2A MIR3911 GC09M127606 STXBP1
GH09I127637 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.2 +53.1 53060 1 HDAC1 PKNOX1 RFX5 ZNF335 POLR3A ZNF366 SCRT2 PHF21A CEBPB NFIL3 STXBP1 TTC16 CFAP157 FAM129B GC09M127606 MIR3911
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR3911 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR3911 Gene

Genomic Locations for MIR3911 Gene
chr9:127,690,687-127,690,795
(GRCh38/hg38)
Size:
109 bases
Orientation:
Minus strand
chr9:130,452,966-130,453,074
(GRCh37/hg19)

Genomic View for MIR3911 Gene

Genes around MIR3911 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3911 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3911 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3911 Gene

Proteins for MIR3911 Gene

Post-translational modifications for MIR3911 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3911 Gene

Domains & Families for MIR3911 Gene

Gene Families for MIR3911 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3911: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3911 Gene

Function for MIR3911 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3911 Gene

Localization for MIR3911 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3911 Gene

Pathways & Interactions for MIR3911 Gene

SuperPathways for MIR3911 Gene

No Data Available

Interacting Proteins for MIR3911 Gene

Gene Ontology (GO) - Biological Process for MIR3911 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3911 Gene

Drugs & Compounds for MIR3911 Gene

No Compound Related Data Available

Transcripts for MIR3911 Gene

mRNA/cDNA for MIR3911 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3911 Gene

No ASD Table

Relevant External Links for MIR3911 Gene

GeneLoc Exon Structure for
MIR3911
ECgene alternative splicing isoforms for
MIR3911

Expression for MIR3911 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3911 Gene

mRNA differential expression in normal tissues according to GTEx for MIR3911 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x6.3), Brain - Cerebellum (x5.8), Brain - Frontal Cortex (BA9) (x5.0), and Brain - Cortex (x4.3).

NURSA nuclear receptor signaling pathways regulating expression of MIR3911 Gene:

MIR3911
genes like me logo Genes that share expression patterns with MIR3911: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3911 Gene

Orthologs for MIR3911 Gene

Evolution for MIR3911 Gene

ENSEMBL:
Gene Tree for MIR3911 (if available)
TreeFam:
Gene Tree for MIR3911 (if available)

No data available for Orthologs for MIR3911 Gene

Paralogs for MIR3911 Gene

No data available for Paralogs for MIR3911 Gene

Variants for MIR3911 Gene

Sequence variations from dbSNP and Humsavar for MIR3911 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1022979073 uncertain-significance, Early Infantile Epileptic Encephalopathy, Autosomal Dominant 127,690,924(-) C/T upstream_transcript_variant
rs1043433 benign, Early Infantile Epileptic Encephalopathy, Autosomal Dominant 127,692,274(-) T/C upstream_transcript_variant
rs118104753 likely-benign, Early Infantile Epileptic Encephalopathy, Autosomal Dominant 127,691,255(-) T/A upstream_transcript_variant
rs147217305 likely-benign, Early Infantile Epileptic Encephalopathy, Autosomal Dominant 127,691,012(-) C/T upstream_transcript_variant
rs148677663 likely-benign, Early Infantile Epileptic Encephalopathy, Autosomal Dominant 127,691,163(-) G/A upstream_transcript_variant

Additional Variant Information for MIR3911 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3911

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR3911 Gene

Disorders for MIR3911 Gene

Additional Disease Information for MIR3911

No disorders were found for MIR3911 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3911 Gene

Publications for MIR3911 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A … Griffiths-Jones S (Nucleic acids research 2011) 3 58
  2. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H … Rovira C (Cancer research 2011) 3 58
  3. Discovery of novel microRNAs in female reproductive tract using next generation sequencing. (PMID: 20224791) Creighton CJ … Gunaratne PH (PloS one 2010) 3 58
  4. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR3911 Gene

Sources for MIR3911 Gene

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