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Aliases for MIR3909 Gene

Subcategory (RNA class) for MIR3909 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3909 Gene

  • MicroRNA 3909 2 3 5
  • Hsa-Mir-3909 3
  • Mir-3909 3

External Ids for MIR3909 Gene

Previous GeneCards Identifiers for MIR3909 Gene

  • GC22U900741
  • GC22P035735

Summaries for MIR3909 Gene

Entrez Gene Summary for MIR3909 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3909 Gene

MIR3909 (MicroRNA 3909) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3909 Gene

Genomics for MIR3909 Gene

Regulatory Elements for MIR3909 Gene

Enhancers for MIR3909 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22G035327 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -6.2 -6156 4.2 ATF1 FOXA2 PKNOX1 MLX ZFP64 ARID4B DMAP1 ZNF48 YY1 ZNF121 TOM1 MB APOL6 HMOX1 MIR3909 GC22P035300
GH22G035331 1 ENCODE dbSUPER 0.7 -3.1 -3140 1.7 CTCF ATF1 PKNOX1 ETV1 ZBTB40 FOSL1 ELK1 CREM NR2F1 REST TOM1 MB MIR3909 GC22P035300
GH22G035309 1.9 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -22.3 -22332 6.7 FOXA2 PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF48 YY1 SLC30A9 GATA2 TOM1 APOL6 HMOX1 GC22P035300 MIR3909
GH22G035305 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -28.2 -28231 3.3 TBL1XR1 JUN WRNIP1 ZMYM3 ZNF2 RELA FOXM1 ARID3A GATA2 POLR2A TOM1 APOL6 GC22P035300 MIR3909
GH22G035335 0.6 ENCODE 0.7 +0.4 439 1.6 ZFP69B JUND ATF3 ZNF692 ZNF629 ZIC2 ATF2 MB TOM1 MIR3909 MIR6069
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3909 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3909 Gene

Chromosome:
22
Start:
35,335,640 bp from pter
End:
35,335,758 bp from pter
Size:
119 bases
Orientation:
Plus strand

Genomic View for MIR3909 Gene

Genes around MIR3909 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3909 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3909 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3909 Gene

Proteins for MIR3909 Gene

Post-translational modifications for MIR3909 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3909 Gene

Domains & Families for MIR3909 Gene

Gene Families for MIR3909 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3909: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3909 Gene

Function for MIR3909 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3909 Gene

Localization for MIR3909 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3909 Gene

Pathways & Interactions for MIR3909 Gene

SuperPathways for MIR3909 Gene

No Data Available

Interacting Proteins for MIR3909 Gene

Gene Ontology (GO) - Biological Process for MIR3909 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3909 Gene

Drugs & Compounds for MIR3909 Gene

No Compound Related Data Available

Transcripts for MIR3909 Gene

mRNA/cDNA for MIR3909 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3909 Gene

No ASD Table

Relevant External Links for MIR3909 Gene

GeneLoc Exon Structure for
MIR3909
ECgene alternative splicing isoforms for
MIR3909

Expression for MIR3909 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3909 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3909 Gene:

MIR3909
genes like me logo Genes that share expression patterns with MIR3909: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3909 Gene

Orthologs for MIR3909 Gene

Evolution for MIR3909 Gene

ENSEMBL:
Gene Tree for MIR3909 (if available)
TreeFam:
Gene Tree for MIR3909 (if available)

No data available for Orthologs for MIR3909 Gene

Paralogs for MIR3909 Gene

No data available for Paralogs for MIR3909 Gene

Variants for MIR3909 Gene

Sequence variations from dbSNP and Humsavar for MIR3909 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1000406025 -- 35,334,835(+) CCCCC(C/G)GCCCC intron-variant, upstream-variant-2KB
rs1001353791 -- 35,334,746(+) GGCTC(A/T)TTTGC intron-variant, upstream-variant-2KB
rs1002353854 -- 35,335,926(+) GGCAG(G/T)GCGGG intron-variant, downstream-variant-500B
rs1003794675 -- 35,335,727(+) CCTGC(A/T)GTCTC intron-variant, nc-transcript-variant
rs1008200465 -- 35,334,555(+) CCCTG(C/T)TTAGT intron-variant, upstream-variant-2KB

Relevant External Links for MIR3909 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3909

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR3909 Gene

Disorders for MIR3909 Gene

Relevant External Links for MIR3909

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3909

No disorders were found for MIR3909 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3909 Gene

Publications for MIR3909 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  2. Discovery of novel microRNAs in female reproductive tract using next generation sequencing. (PMID: 20224791) Creighton C.J. … Gunaratne P.H. (PLoS ONE 2010) 3 64
  3. Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3' trailers. (PMID: 20498841) Liao J.Y. … Qu L.H. (PLoS ONE 2010) 3 64
  4. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3909 Gene

Sources for MIR3909 Gene

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