Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MIR3908 Gene

Subcategory (RNA class) for MIR3908 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3908 Gene

  • MicroRNA 3908 2 3 5
  • Hsa-Mir-3908 3

External Ids for MIR3908 Gene

Previous GeneCards Identifiers for MIR3908 Gene

  • GC12U901507
  • GC12P124022

Summaries for MIR3908 Gene

Entrez Gene Summary for MIR3908 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3908 Gene

MIR3908 (MicroRNA 3908) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3908 Gene

Genomics for MIR3908 Gene

Regulatory Elements for MIR3908 Gene

Enhancers for MIR3908 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F123550 0.7 Ensembl 0.4 +14.6 14592 0.4 RILPL1 MIR3908 GC12M123581
GH12F123554 0.4 Ensembl 0.3 +18.4 18392 0.4 NFE2 NFE2L2 TCTN2 MIR3908 GC12M123581
GH12F123570 1.2 Ensembl ENCODE 0.3 +34.7 34730 1.5 INSM2 ARID4B ETS1 POLR3A ZNF366 ZNF143 FOS CREM THAP11 ZNF362 LOC101927415 TMED2 C12orf65 EIF2B1 GC12M123581 MIR3908
GH12F123582 0.2 ENCODE 0.2 +47.8 47786 4.0 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 LOC101927415 EIF2B1 NCOR2 TCTN2 DDX55 ATP6V0A2 GTF2H3 KMT5A LOC105370046 ENSG00000235423
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MIR3908 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3908 Gene

Chromosome:
12
Start:
123,536,409 bp from pter
End:
123,536,534 bp from pter
Size:
126 bases
Orientation:
Plus strand

Genomic View for MIR3908 Gene

Genes around MIR3908 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3908 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3908 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3908 Gene

Proteins for MIR3908 Gene

Post-translational modifications for MIR3908 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3908 Gene

Domains & Families for MIR3908 Gene

Gene Families for MIR3908 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3908: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3908 Gene

Function for MIR3908 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3908 Gene

Localization for MIR3908 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3908 Gene

Pathways & Interactions for MIR3908 Gene

SuperPathways for MIR3908 Gene

No Data Available

Interacting Proteins for MIR3908 Gene

Gene Ontology (GO) - Biological Process for MIR3908 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3908 Gene

Transcripts for MIR3908 Gene

mRNA/cDNA for MIR3908 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3908 Gene

No ASD Table

Relevant External Links for MIR3908 Gene

GeneLoc Exon Structure for
MIR3908
ECgene alternative splicing isoforms for
MIR3908

Expression for MIR3908 Gene

mRNA expression in normal human tissues for MIR3908 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3908 Gene:

MIR3908
genes like me logo Genes that share expression patterns with MIR3908: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR3908 Gene

Orthologs for MIR3908 Gene

Evolution for MIR3908 Gene

ENSEMBL:
Gene Tree for MIR3908 (if available)
TreeFam:
Gene Tree for MIR3908 (if available)

No data available for Orthologs for MIR3908 Gene

Paralogs for MIR3908 Gene

No data available for Paralogs for MIR3908 Gene

Variants for MIR3908 Gene

Sequence variations from dbSNP and Humsavar for MIR3908 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs111803974 -- 123,536,470(+) GTTAA(C/T)GTGTA nc-transcript-variant
rs112319707 -- 123,534,815(+) CATAA(A/C)GCGCA upstream-variant-2KB
rs112704815 -- 123,535,783(+) GGCAG(C/T)ATGGC upstream-variant-2KB
rs137963709 -- 123,536,138(+) TTAAT(A/T)AATTA upstream-variant-2KB
rs137971438 -- 123,534,747(+) GGTTG(C/T)AGGTA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3908 Gene

Variant ID Type Subtype PubMed ID
esv2422416 CNV duplication 17116639
nsv1037260 CNV gain 25217958

Relevant External Links for MIR3908 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3908

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3908 Gene

Disorders for MIR3908 Gene

Relevant External Links for MIR3908

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3908

No disorders were found for MIR3908 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3908 Gene

Publications for MIR3908 Gene

  1. Discovery of novel microRNAs in female reproductive tract using next generation sequencing. (PMID: 20224791) Creighton C.J. … Gunaratne P.H. (PLoS ONE 2010) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3908 Gene

Sources for MIR3908 Gene

Content
Loading form....