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Aliases for MIR3907 Gene

Subcategory (RNA class) for MIR3907 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR3907 Gene

  • MicroRNA 3907 2 3 5
  • Hsa-Mir-3907 3

External Ids for MIR3907 Gene

Previous GeneCards Identifiers for MIR3907 Gene

  • GC07U903069
  • GC07M151132

Summaries for MIR3907 Gene

Entrez Gene Summary for MIR3907 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3907 Gene

MIR3907 (MicroRNA 3907) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3907 Gene

Genomics for MIR3907 Gene

Regulatory Elements for MIR3907 Gene

Enhancers for MIR3907 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G151432 0.9 Ensembl ENCODE 0.7 +0.3 290 1.2 ZNF263 CTCF ZFP69B GLIS2 ZNF692 SCRT2 GLIS1 MYC ENSG00000241456 MIR3907
GH07G151424 1.3 Ensembl ENCODE 0.4 +5.8 5797 6.5 HDGF ARNT SIN3A ARID4B FEZF1 ZNF2 ZNF143 FOS ZNF263 REST WDR86 ENSG00000241456 CRYGN WDR86-AS1 MIR3907
GH07G151439 1.1 Ensembl ENCODE 0.4 -7.2 -7204 3.4 PKNOX1 ZSCAN4 FEZF1 EGR2 ZNF263 USF2 CEBPB RAD51 ZSCAN16 MYNN ENSG00000241456 CRYGN WDR86 MIR3907
GH07G151436 0.5 ENCODE 0.7 -3.3 -3307 1.2 SCRT1 CBX3 SCRT2 ZBTB33 NR2F2 MIR3907 CRYGN
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3907 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3907 Gene

Chromosome:
7
Start:
151,433,489 bp from pter
End:
151,433,639 bp from pter
Size:
151 bases
Orientation:
Minus strand

Genomic View for MIR3907 Gene

Genes around MIR3907 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3907 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3907 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3907 Gene

ORGUL Member Location for MIR3907 Gene

ORGUL Member Location for MIR3907 gene

Proteins for MIR3907 Gene

Post-translational modifications for MIR3907 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3907 Gene

Domains & Families for MIR3907 Gene

Gene Families for MIR3907 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3907: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3907 Gene

Function for MIR3907 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3907 Gene

Localization for MIR3907 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3907 Gene

Pathways & Interactions for MIR3907 Gene

SuperPathways for MIR3907 Gene

No Data Available

Interacting Proteins for MIR3907 Gene

Gene Ontology (GO) - Biological Process for MIR3907 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3907 Gene

Drugs & Compounds for MIR3907 Gene

No Compound Related Data Available

Transcripts for MIR3907 Gene

mRNA/cDNA for MIR3907 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3907 Gene

No ASD Table

Relevant External Links for MIR3907 Gene

GeneLoc Exon Structure for
MIR3907
ECgene alternative splicing isoforms for
MIR3907

Expression for MIR3907 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3907 Gene

mRNA differential expression in normal tissues according to GTEx for MIR3907 Gene

This gene is overexpressed in Thyroid (x36.2), Brain - Anterior cingulate cortex (BA24) (x6.1), Cervix - Endocervix (x5.6), and Uterus (x5.1).

NURSA nuclear receptor signaling pathways regulating expression of MIR3907 Gene:

MIR3907
genes like me logo Genes that share expression patterns with MIR3907: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3907 Gene

Orthologs for MIR3907 Gene

Evolution for MIR3907 Gene

ENSEMBL:
Gene Tree for MIR3907 (if available)
TreeFam:
Gene Tree for MIR3907 (if available)

No data available for Orthologs for MIR3907 Gene

Paralogs for MIR3907 Gene

No data available for Paralogs for MIR3907 Gene

Variants for MIR3907 Gene

Sequence variations from dbSNP and Humsavar for MIR3907 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000432180 -- 151,435,089(+) CCTCG(G/T)CCCAG intron-variant, upstream-variant-2KB
rs1000812327 -- 151,433,847(+) CAGAG(A/G)AAAGG intron-variant, upstream-variant-2KB
rs1001886775 -- 151,435,507(+) GGCAG(A/G)AGGGG intron-variant, upstream-variant-2KB
rs1003231907 -- 151,433,302(+) GGAAC(A/G)GGGGA intron-variant, downstream-variant-500B
rs1006435352 -- 151,435,179(+) CAAAT(C/T)GTTCC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3907 Gene

Variant ID Type Subtype PubMed ID
dgv3695n106 OTHER inversion 24896259
nsv1067934 OTHER inversion 25765185
nsv1151906 OTHER inversion 26484159
nsv6006 CNV insertion 18451855

Relevant External Links for MIR3907 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3907

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3907 Gene

Disorders for MIR3907 Gene

Relevant External Links for MIR3907

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3907

No disorders were found for MIR3907 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3907 Gene

Publications for MIR3907 Gene

  1. Discovery of novel microRNAs in female reproductive tract using next generation sequencing. (PMID: 20224791) Creighton C.J. … Gunaratne P.H. (PLoS ONE 2010) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3907 Gene

Sources for MIR3907 Gene

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