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Aliases for MIR3689F Gene

Subcategory (RNA class) for MIR3689F Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR3689F Gene

  • MicroRNA 3689f 2 3 5
  • Hsa-Mir-3689f 3
  • Mir-3689f 3

External Ids for MIR3689F Gene

Previous GeneCards Identifiers for MIR3689F Gene

  • GC09U901733
  • GC09M137759
  • GC09M137771
  • GC09M137782
  • GC09M134858
  • GC09M134862
  • GC09M134874
  • GC09M134884

Summaries for MIR3689F Gene

Entrez Gene Summary for MIR3689F Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3689F Gene

MIR3689F (MicroRNA 3689f) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3689F Gene

Genomics for MIR3689F Gene

Regulatory Elements for MIR3689F Gene

Enhancers for MIR3689F Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09F134858 0.5 ENCODE 0.4 -7.8 -7803 1.0 TBP PKNOX1 BMI1 RAD21 RCOR1 ETV6 CREM CBFB JUNB TBX21 FCN1 PPP1R26-AS1 FCN2 MIR3689F
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MIR3689F on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3689F Gene

Chromosome:
9
Start:
134,850,742 bp from pter
End:
134,850,807 bp from pter
Size:
66 bases
Orientation:
Minus strand

Genomic View for MIR3689F Gene

Genes around MIR3689F on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3689F Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3689F Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3689F Gene

ORGUL Member Location for MIR3689F Gene

ORGUL Member Location for MIR3689F gene

Proteins for MIR3689F Gene

Post-translational modifications for MIR3689F Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3689F Gene

Domains & Families for MIR3689F Gene

Gene Families for MIR3689F Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3689F: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3689F Gene

Function for MIR3689F Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3689F Gene

Localization for MIR3689F Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3689F Gene

Pathways & Interactions for MIR3689F Gene

SuperPathways for MIR3689F Gene

No Data Available

Interacting Proteins for MIR3689F Gene

Gene Ontology (GO) - Biological Process for MIR3689F Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3689F Gene

Transcripts for MIR3689F Gene

mRNA/cDNA for MIR3689F Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3689F Gene

No ASD Table

Relevant External Links for MIR3689F Gene

GeneLoc Exon Structure for
MIR3689F
ECgene alternative splicing isoforms for
MIR3689F

Expression for MIR3689F Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR3689F Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3689F Gene:

MIR3689F
genes like me logo Genes that share expression patterns with MIR3689F: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR3689F Gene

Orthologs for MIR3689F Gene

Evolution for MIR3689F Gene

ENSEMBL:
Gene Tree for MIR3689F (if available)
TreeFam:
Gene Tree for MIR3689F (if available)

No data available for Orthologs for MIR3689F Gene

Paralogs for MIR3689F Gene

No data available for Paralogs for MIR3689F Gene

Variants for MIR3689F Gene

Sequence variations from dbSNP and Humsavar for MIR3689F Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs111306040 -- 134,852,010(+) CTTTA(C/G)ATGGA intron-variant, upstream-variant-2KB
rs111825329 -- 134,852,111(+) GAGGT(A/G)TGCAC intron-variant, upstream-variant-2KB
rs112071043 -- 134,852,543(+) GGTGT(C/G)CACAG intron-variant, upstream-variant-2KB
rs112861534 -- 134,852,068(+) GAGGT(A/G)TGCAC intron-variant, upstream-variant-2KB
rs113554774 -- 134,852,158(+) TGTGC(A/G)CAGGT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3689F Gene

Variant ID Type Subtype PubMed ID
esv25704 CNV gain 19812545
esv2739138 CNV deletion 23290073
esv2739249 CNV deletion 23290073
esv994946 CNV loss 20482838
nsv1043726 CNV gain 25217958
nsv1125319 OTHER inversion 24896259
nsv511431 CNV loss 21212237

Relevant External Links for MIR3689F Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3689F

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3689F Gene

Disorders for MIR3689F Gene

Relevant External Links for MIR3689F

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3689F

No disorders were found for MIR3689F Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3689F Gene

Publications for MIR3689F Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  2. Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs. (PMID: 20733160) Jima D.D. … Dave S.S. (Blood 2010) 3 64
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3689F Gene

Sources for MIR3689F Gene

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