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Aliases for MIR3689F Gene

Subcategory (RNA class) for MIR3689F Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR3689F Gene

  • MicroRNA 3689f 2 3
  • Hsa-Mir-3689f 3

External Ids for MIR3689F Gene

Summaries for MIR3689F Gene

Entrez Gene Summary for MIR3689F Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3689F Gene

MIR3689F (MicroRNA 3689f) is a RNA Gene, and belongs to miRNA RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3689F Gene

Genomics for MIR3689F Gene

Genomic Location for MIR3689F Gene

Start:
134,850,742 bp from pter
End:
134,850,807 bp from pter
Size:
66 bases
Orientation:
Minus strand

Genomic View for MIR3689F Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIR3689F Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3689F Gene

ORGUL Member Location for MIR3689F Gene

ORGUL Member Location for MIR3689F gene

No data available for Regulatory Elements for MIR3689F Gene

Proteins for MIR3689F Gene

Post-translational modifications for MIR3689F Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3689F Gene

Domains for MIR3689F Gene

Gene Families for MIR3689F Gene

HGNC:
  • MIR :ncRNAs / Micro RNAs
genes like me logo Genes that share domains with MIR3689F: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for MIR3689F Gene

Function for MIR3689F Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MIR3689F Gene

Localization for MIR3689F Gene

No data available for Gene Ontology (GO) - Cellular Components for MIR3689F Gene

Pathways for MIR3689F Gene

SuperPathways for MIR3689F Gene

No Data Available

Interacting Proteins for MIR3689F Gene

Gene Ontology (GO) - Biological Process for MIR3689F Gene

None

No data available for Pathways by source for MIR3689F Gene

Transcripts for MIR3689F Gene

mRNA/cDNA for MIR3689F Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3689F Gene

No ASD Table

Relevant External Links for MIR3689F Gene

GeneLoc Exon Structure for
MIR3689F
ECgene alternative splicing isoforms for
MIR3689F

Expression for MIR3689F Gene

mRNA expression in normal human tissues for MIR3689F Gene

genes like me logo Genes that share expressions with MIR3689F: view

Orthologs for MIR3689F Gene

Evolution for MIR3689F Gene

ENSEMBL:
Gene Tree for MIR3689F (if available)
TreeFam:
Gene Tree for MIR3689F (if available)

No data available for Orthologs for MIR3689F Gene

Paralogs for MIR3689F Gene

No data available for Paralogs for MIR3689F Gene

Variants for MIR3689F Gene

Sequence variations from dbSNP and Humsavar for MIR3689F Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs7036634 -- 134,852,755(+) GAGGT(A/G)TGCGC upstream-variant-2KB
rs117439372 -- 134,852,759(+) TGTGC(A/G)CAGGT upstream-variant-2KB
rs201255981 -- 134,852,683(+) CAGCA(C/T)TGTGT upstream-variant-2KB
rs202121727 -- 134,852,701(+) AGATG(A/G)AGTTG upstream-variant-2KB
rs534436683 -- 134,852,674(+) GTGCA(A/C)AGGCA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3689F Gene

Variant ID Type Subtype PubMed ID
esv2739138 CNV Deletion 23290073
nsv894195 CNV Gain 21882294
dgv8354n71 CNV Loss 21882294
nsv894199 CNV Loss 21882294
nsv894202 CNV Loss 21882294
esv25704 CNV Gain 19812545
nsv511431 CNV Loss 21212237
esv994946 CNV Loss 20482838
esv2739249 CNV Deletion 23290073

Relevant External Links for MIR3689F Gene

HapMap Linkage Disequilibrium report
MIR3689F

Disorders for MIR3689F Gene

No disorders were found for MIR3689F Gene.

No data available for UniProtKB/Swiss-Prot for MIR3689F Gene

Publications for MIR3689F Gene

  1. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3
  2. Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs. (PMID: 20733160) Jima D.D. … Dave S.S. (Blood 2010) 3

Products for MIR3689F Gene

Sources for MIR3689F Gene

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