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Aliases for MIR3689C Gene

Subcategory (RNA class) for MIR3689C Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR3689C Gene

  • MicroRNA 3689c 2 3 5
  • Hsa-Mir-3689c 3

External Ids for MIR3689C Gene

Previous GeneCards Identifiers for MIR3689C Gene

  • GC09U901724
  • GC09M137756
  • GC09M137768
  • GC09M137779
  • GC09M134852
  • GC09M134867
  • GC09M134878
  • GC09M134885
  • GC09M134892
  • GC09M134899
  • GC09M134910

Summaries for MIR3689C Gene

Entrez Gene Summary for MIR3689C Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3689C Gene

MIR3689C (MicroRNA 3689c) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3689C Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3689C Gene

Genomics for MIR3689C Gene

GeneHancer (GH) Regulatory Elements for MIR3689C Gene

Promoters and enhancers for MIR3689C Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09I134805 Enhancer 1 ENCODE dbSUPER 0.3 +40.0 39971 7.7 HDGF PKNOX1 INSM2 KLF17 ZNF76 FEZF1 ZNF2 ZNF335 ZNF680 REST BRD3 FCN2 FCN1 WDR5 PPP1R26-AS1 COL5A1 RXRA MIR3689C GC09P134769
GH09I134774 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 0.2 +73.7 73673 2.4 NFIB KLF17 FEZF1 CEBPG RFX5 CTBP1 GATA3 POLR2A SCRT2 RCOR1 COL5A1 OLFM1 GC09P134769 MIR3689C
GH09I134778 Enhancer 1 ENCODE dbSUPER 0.2 +70.3 70296 0.5 NFIB SIN3A RAD21 RFX5 ZNF143 RCOR1 DEK ZNF654 CEBPB GATAD2B GC09P134769 MIR3689C COL5A1
GH09I134845 Enhancer 0.2 FANTOM5 0.8 +3.6 3618 0.3 MIR3689C LOC101448202 GC09P134769
GH09I134783 Enhancer 0.7 ENCODE dbSUPER 0.2 +65.6 65570 0.1 CEBPB MNT FEZF1 CEBPG GC09P134769 MIR3689C COL5A1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR3689C on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR3689C Gene

Genomic Locations for MIR3689C Gene
chr9:134,849,298-134,849,369
(GRCh38/hg38)
Size:
72 bases
Orientation:
Minus strand
chr9:137,741,144-137,741,215
(GRCh37/hg19)

Genomic View for MIR3689C Gene

Genes around MIR3689C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3689C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3689C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3689C Gene

ORGUL Member Location for MIR3689C Gene

ORGUL Member Location for MIR3689C gene

Proteins for MIR3689C Gene

Post-translational modifications for MIR3689C Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3689C Gene

Domains & Families for MIR3689C Gene

Gene Families for MIR3689C Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3689C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3689C Gene

Function for MIR3689C Gene

Phenotypes From GWAS Catalog for MIR3689C Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3689C Gene

Localization for MIR3689C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3689C Gene

Pathways & Interactions for MIR3689C Gene

SuperPathways for MIR3689C Gene

No Data Available

Interacting Proteins for MIR3689C Gene

Gene Ontology (GO) - Biological Process for MIR3689C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3689C Gene

Drugs & Compounds for MIR3689C Gene

No Compound Related Data Available

Transcripts for MIR3689C Gene

mRNA/cDNA for MIR3689C Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3689C Gene

No ASD Table

Relevant External Links for MIR3689C Gene

GeneLoc Exon Structure for
MIR3689C
ECgene alternative splicing isoforms for
MIR3689C

Expression for MIR3689C Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3689C Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3689C Gene:

MIR3689C
genes like me logo Genes that share expression patterns with MIR3689C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3689C Gene

Orthologs for MIR3689C Gene

Evolution for MIR3689C Gene

ENSEMBL:
Gene Tree for MIR3689C (if available)
TreeFam:
Gene Tree for MIR3689C (if available)

No data available for Orthologs for MIR3689C Gene

Paralogs for MIR3689C Gene

No data available for Paralogs for MIR3689C Gene

Variants for MIR3689C Gene

Sequence variations from dbSNP and Humsavar for MIR3689C Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1004321706 -- 134,851,368(-) C/G upstream_transcript_variant
rs1011193841 -- 134,851,144(-) G/A upstream_transcript_variant
rs1017947627 -- 134,850,239(-) G/A/C upstream_transcript_variant
rs1019636044 -- 134,850,283(-) G/A upstream_transcript_variant
rs1023134891 -- 134,851,223(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR3689C Gene

Variant ID Type Subtype PubMed ID
esv25704 CNV gain 19812545
esv2739138 CNV deletion 23290073
esv2739248 CNV deletion 23290073
esv994946 CNV loss 20482838
nsv1043726 CNV gain 25217958
nsv1125319 OTHER inversion 24896259
nsv511431 CNV loss 21212237
nsv512126 CNV loss 21212237

Additional Variant Information for MIR3689C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3689C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3689C Gene

Disorders for MIR3689C Gene

Additional Disease Information for MIR3689C

No disorders were found for MIR3689C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3689C Gene

Publications for MIR3689C Gene

  1. Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs. (PMID: 20733160) Jima DD … Hematologic Malignancies Research Consortium (Blood 2010) 3 58
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR3689C Gene

Sources for MIR3689C Gene

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