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Aliases for MIR3689C Gene

Subcategory (RNA class) for MIR3689C Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR3689C Gene

  • MicroRNA 3689c 2 3 5
  • Hsa-Mir-3689c 3

External Ids for MIR3689C Gene

Previous GeneCards Identifiers for MIR3689C Gene

  • GC09U901724
  • GC09M137756
  • GC09M137768
  • GC09M137779
  • GC09M134852
  • GC09M134867
  • GC09M134878
  • GC09M134885
  • GC09M134892

Summaries for MIR3689C Gene

Entrez Gene Summary for MIR3689C Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3689C Gene

MIR3689C (MicroRNA 3689c) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3689C Gene

Genomics for MIR3689C Gene

Regulatory Elements for MIR3689C Gene

Enhancers for MIR3689C Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09G134805 1.2 ENCODE dbSUPER 0.3 +40.0 39971 7.7 HDGF PKNOX1 FEZF1 ZNF2 CBX5 ZNF202 TSHZ1 REST ZNF518A ZNF585B FCN2 FCN1 PPP1R26-AS1 COL5A1 RXRA MIR3689C GC09P134769
GH09G134774 1.4 FANTOM5 ENCODE dbSUPER 0.2 +73.7 73674 2.4 NFIB KLF17 FEZF1 RFX5 ZNF366 SCRT2 RCOR1 FOS EGR2 ZHX1 COL5A1 OLFM1 GC09P134769 MIR3689C
GH09G134778 1.3 ENCODE dbSUPER 0.2 +70.3 70296 0.5 HDGF FOXA2 MLX ZFP64 SIN3A ARID4B DMAP1 ZNF48 YY1 KLF13 GC09P134769 MIR3689C
GH09G134784 1.1 ENCODE dbSUPER 0.2 +64.6 64649 1.0 BCOR HDAC1 ARNT SIN3A ZMYM3 IRF9 ZNF316 ZFHX2 EGR1 POLR2A GC09P134769 MIR3689C
GH09G134845 0.3 FANTOM5 0.7 +3.6 3619 0.3 MIR3689C GC09P134769
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3689C on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3689C Gene

Chromosome:
9
Start:
134,849,298 bp from pter
End:
134,849,369 bp from pter
Size:
72 bases
Orientation:
Minus strand

Genomic View for MIR3689C Gene

Genes around MIR3689C on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3689C Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3689C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3689C Gene

ORGUL Member Location for MIR3689C Gene

ORGUL Member Location for MIR3689C gene

Proteins for MIR3689C Gene

Post-translational modifications for MIR3689C Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3689C Gene

Domains & Families for MIR3689C Gene

Gene Families for MIR3689C Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3689C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3689C Gene

Function for MIR3689C Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3689C Gene

Localization for MIR3689C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3689C Gene

Pathways & Interactions for MIR3689C Gene

SuperPathways for MIR3689C Gene

No Data Available

Interacting Proteins for MIR3689C Gene

Gene Ontology (GO) - Biological Process for MIR3689C Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3689C Gene

Transcripts for MIR3689C Gene

mRNA/cDNA for MIR3689C Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3689C Gene

No ASD Table

Relevant External Links for MIR3689C Gene

GeneLoc Exon Structure for
MIR3689C
ECgene alternative splicing isoforms for
MIR3689C

Expression for MIR3689C Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3689C Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3689C Gene:

MIR3689C
genes like me logo Genes that share expression patterns with MIR3689C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3689C Gene

Orthologs for MIR3689C Gene

Evolution for MIR3689C Gene

ENSEMBL:
Gene Tree for MIR3689C (if available)
TreeFam:
Gene Tree for MIR3689C (if available)

No data available for Orthologs for MIR3689C Gene

Paralogs for MIR3689C Gene

No data available for Paralogs for MIR3689C Gene

Variants for MIR3689C Gene

Sequence variations from dbSNP and Humsavar for MIR3689C Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1004321706 -- 134,851,368(+) TGCAG(C/G)TGAAT intron-variant, upstream-variant-2KB
rs1011193841 -- 134,851,144(+) TCTAG(A/G)TCCAC intron-variant, upstream-variant-2KB
rs1017947627 -- 134,850,239(+) AGGAA(A/G)CACAG intron-variant, nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB
rs1019636044 -- 134,850,283(+) GCTCA(A/G)GAAGA intron-variant, nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB
rs1023134891 -- 134,851,223(+) CACCC(C/T)ACCCC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3689C Gene

Variant ID Type Subtype PubMed ID
esv25704 CNV gain 19812545
esv2739138 CNV deletion 23290073
esv2739248 CNV deletion 23290073
esv994946 CNV loss 20482838
nsv1043726 CNV gain 25217958
nsv1125319 OTHER inversion 24896259
nsv511431 CNV loss 21212237
nsv512126 CNV loss 21212237

Relevant External Links for MIR3689C Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3689C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3689C Gene

Disorders for MIR3689C Gene

Relevant External Links for MIR3689C

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3689C

No disorders were found for MIR3689C Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3689C Gene

Publications for MIR3689C Gene

  1. Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs. (PMID: 20733160) Jima D.D. … Dave S.S. (Blood 2010) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3689C Gene

Sources for MIR3689C Gene

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