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Aliases for MIR3689C Gene

Subcategory (RNA class) for MIR3689C Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR3689C Gene

  • MicroRNA 3689c 2 3
  • Hsa-Mir-3689c 3

External Ids for MIR3689C Gene

Previous GeneCards Identifiers for MIR3689C Gene

  • GC09U901724
  • GC09M137756
  • GC09M137768
  • GC09M137779

Summaries for MIR3689C Gene

Entrez Gene Summary for MIR3689C Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3689C Gene

MIR3689C (MicroRNA 3689c) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3689C Gene

Genomics for MIR3689C Gene

Genomic Location for MIR3689C Gene

Start:
134,849,298 bp from pter
End:
134,849,369 bp from pter
Size:
72 bases
Orientation:
Minus strand

Genomic View for MIR3689C Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIR3689C Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3689C Gene

ORGUL Member Location for MIR3689C Gene

ORGUL Member Location for MIR3689C gene

No data available for Regulatory Elements for MIR3689C Gene

Proteins for MIR3689C Gene

Post-translational modifications for MIR3689C Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3689C Gene

Domains for MIR3689C Gene

Gene Families for MIR3689C Gene

HGNC:
  • MIR :ncRNAs / Micro RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3689C: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3689C Gene

Function for MIR3689C Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MIR3689C Gene

Localization for MIR3689C Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3689C Gene

Pathways for MIR3689C Gene

SuperPathways for MIR3689C Gene

No Data Available

Interacting Proteins for MIR3689C Gene

Gene Ontology (GO) - Biological Process for MIR3689C Gene

None

No data available for Pathways by source for MIR3689C Gene

Transcripts for MIR3689C Gene

mRNA/cDNA for MIR3689C Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3689C Gene

No ASD Table

Relevant External Links for MIR3689C Gene

GeneLoc Exon Structure for
MIR3689C
ECgene alternative splicing isoforms for
MIR3689C

Expression for MIR3689C Gene

mRNA expression in normal human tissues for MIR3689C Gene

genes like me logo Genes that share expressions with MIR3689C: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for MIR3689C Gene

Orthologs for MIR3689C Gene

Evolution for MIR3689C Gene

ENSEMBL:
Gene Tree for MIR3689C (if available)
TreeFam:
Gene Tree for MIR3689C (if available)

No data available for Orthologs for MIR3689C Gene

Paralogs for MIR3689C Gene

No data available for Paralogs for MIR3689C Gene

Variants for MIR3689C Gene

Sequence variations from dbSNP and Humsavar for MIR3689C Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs28510382 -- 134,848,853(+) CACGG(G/T)ATCAC downstream-variant-500B
rs28718760 -- 134,848,850(+) AAGCA(C/T)GGGAT downstream-variant-500B
rs34435434 -- 134,848,803(+) AGCAC(A/G)GGATC downstream-variant-500B
rs34491209 -- 134,848,875(+) AGCAC(A/G)GGATC downstream-variant-500B
rs34569013 -- 134,848,917(+) CCAGG(A/G)AGCAC downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for MIR3689C Gene

Variant ID Type Subtype PubMed ID
esv2739138 CNV Deletion 23290073
nsv894195 CNV Gain 21882294
dgv8354n71 CNV Loss 21882294
nsv894199 CNV Loss 21882294
nsv894202 CNV Loss 21882294
esv25704 CNV Gain 19812545
nsv512126 CNV Loss 21212237
nsv511431 CNV Loss 21212237
esv994946 CNV Loss 20482838
esv2739248 CNV Deletion 23290073

Relevant External Links for MIR3689C Gene

HapMap Linkage Disequilibrium report
MIR3689C

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MIR3689C Gene

Disorders for MIR3689C Gene

No disorders were found for MIR3689C Gene.

No data available for UniProtKB/Swiss-Prot for MIR3689C Gene

Publications for MIR3689C Gene

  1. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3
  2. Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs. (PMID: 20733160) Jima D.D. … Dave S.S. (Blood 2010) 3

Products for MIR3689C Gene

Sources for MIR3689C Gene

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