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Aliases for MIR3689A Gene

Subcategory (RNA class) for MIR3689A Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR3689A Gene

  • MicroRNA 3689a 2 3 5
  • Hsa-Mir-3689a 3

External Ids for MIR3689A Gene

Previous GeneCards Identifiers for MIR3689A Gene

  • GC09U901636
  • GC09M137758
  • GC09M137770
  • GC09M137780
  • GC09M134853
  • GC09M134869
  • GC09M134879
  • GC09M134886
  • GC09M134893

Summaries for MIR3689A Gene

Entrez Gene Summary for MIR3689A Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3689A Gene

MIR3689A (MicroRNA 3689a) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3689A Gene

Genomics for MIR3689A Gene

Genomic Location for MIR3689A Gene

Chromosome:
9
Start:
134,849,487 bp from pter
End:
134,849,564 bp from pter
Size:
78 bases
Orientation:
Minus strand

Genomic View for MIR3689A Gene

Genes around MIR3689A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3689A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3689A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3689A Gene

ORGUL Member Location for MIR3689A Gene

ORGUL Member Location for MIR3689A gene

No data available for Regulatory Elements for MIR3689A Gene

Proteins for MIR3689A Gene

Post-translational modifications for MIR3689A Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3689A Gene

Domains & Families for MIR3689A Gene

Gene Families for MIR3689A Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3689A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3689A Gene

Function for MIR3689A Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3689A Gene

Localization for MIR3689A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3689A Gene

Pathways & Interactions for MIR3689A Gene

SuperPathways for MIR3689A Gene

No Data Available

Interacting Proteins for MIR3689A Gene

Gene Ontology (GO) - Biological Process for MIR3689A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3689A Gene

Drugs & Compounds for MIR3689A Gene

No Compound Related Data Available

Transcripts for MIR3689A Gene

mRNA/cDNA for MIR3689A Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3689A Gene

No ASD Table

Relevant External Links for MIR3689A Gene

GeneLoc Exon Structure for
MIR3689A
ECgene alternative splicing isoforms for
MIR3689A

Expression for MIR3689A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3689A Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3689A Gene:

MIR3689A
genes like me logo Genes that share expression patterns with MIR3689A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3689A Gene

Orthologs for MIR3689A Gene

Evolution for MIR3689A Gene

ENSEMBL:
Gene Tree for MIR3689A (if available)
TreeFam:
Gene Tree for MIR3689A (if available)

No data available for Orthologs for MIR3689A Gene

Paralogs for MIR3689A Gene

No data available for Paralogs for MIR3689A Gene

Variants for MIR3689A Gene

Sequence variations from dbSNP and Humsavar for MIR3689A Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs1003947700 -- 134,851,476(+) GGTGT(A/G)CACAG intron-variant, upstream-variant-2KB
rs1004321706 -- 134,851,368(+) TGCAG(C/G)TGAAT intron-variant, upstream-variant-2KB
rs1011193841 -- 134,851,144(+) TCTAG(A/G)TCCAC intron-variant, upstream-variant-2KB
rs1014947984 -- 134,851,392(+) TAAAC(A/G)TCCTG intron-variant, upstream-variant-2KB
rs1015705484 -- 134,851,484(+) CAGGT(A/G)GCATT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3689A Gene

Variant ID Type Subtype PubMed ID
esv1645882 CNV deletion 17803354
esv25704 CNV gain 19812545
esv2739138 CNV deletion 23290073
esv2739248 CNV deletion 23290073
esv2739249 CNV deletion 23290073
esv994946 CNV loss 20482838
nsv1043726 CNV gain 25217958
nsv1125319 OTHER inversion 24896259
nsv1142711 CNV deletion 24896259
nsv1144297 CNV deletion 24896259
nsv416186 CNV deletion 16902084
nsv511431 CNV loss 21212237
nsv512126 CNV loss 21212237

Relevant External Links for MIR3689A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3689A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3689A Gene

Disorders for MIR3689A Gene

Relevant External Links for MIR3689A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3689A

No disorders were found for MIR3689A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3689A Gene

Publications for MIR3689A Gene

  1. Discovery of novel microRNAs in female reproductive tract using next generation sequencing. (PMID: 20224791) Creighton C.J. … Gunaratne P.H. (PLoS ONE 2010) 3 64
  2. Analysis of microRNA transcriptome by deep sequencing of small RNA libraries of peripheral blood. (PMID: 20459673) Vaz C. … Bhattacharya A. (BMC Genomics 2010) 3 64
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3689A Gene

Sources for MIR3689A Gene

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