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Aliases for MIR3688-2 Gene

Subcategory (RNA class) for MIR3688-2 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3688-2 Gene

  • MicroRNA 3688-2 2 3 5
  • Hsa-Mir-3688-2 3
  • Mir-3688-2 3

External Ids for MIR3688-2 Gene

Previous GeneCards Identifiers for MIR3688-2 Gene

  • GC04U901496
  • GC04M160051
  • GC04P160052

Summaries for MIR3688-2 Gene

Entrez Gene Summary for MIR3688-2 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3688-2 Gene

MIR3688-2 (MicroRNA 3688-2) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3688-2 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3688-2 Gene

Genomics for MIR3688-2 Gene

GeneHancer (GH) Regulatory Elements for MIR3688-2 Gene

Promoters and enhancers for MIR3688-2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04I159130 Enhancer 0.5 ENCODE 550.8 +1.6 1579 0.2 NFIC SMARCA4 HDAC2 DPF2 ZEB2 MIR3688-1 MIR3688-2 RAPGEF2 GC04P159359 GC04P158864
GH04I159102 Promoter/Enhancer 1.8 Ensembl ENCODE dbSUPER 0.3 -23.6 -23611 5.9 HDGF PKNOX1 FOXA2 ARID4B SIN3A FEZF1 ZNF2 IRF4 YY1 POLR2B RAPGEF2 C4orf46 C4orf45 ENSG00000271817 ETFDH MIR3688-2 GC04P158864
GH04I159118 Enhancer 0.3 Ensembl 0.4 -10.7 -10704 0.2 GATAD2A MIR3688-2 RAPGEF2 GC04P158864
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR3688-2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR3688-2 Gene

Genomic Locations for MIR3688-2 Gene
chr4:159,128,805-159,128,891
(GRCh38/hg38)
Size:
87 bases
Orientation:
Plus strand
chr4:160,049,957-160,050,043
(GRCh37/hg19)

Genomic View for MIR3688-2 Gene

Genes around MIR3688-2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3688-2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3688-2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3688-2 Gene

Proteins for MIR3688-2 Gene

Post-translational modifications for MIR3688-2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3688-2 Gene

Domains & Families for MIR3688-2 Gene

Gene Families for MIR3688-2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3688-2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3688-2 Gene

Function for MIR3688-2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3688-2 Gene

Localization for MIR3688-2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3688-2 Gene

Pathways & Interactions for MIR3688-2 Gene

SuperPathways for MIR3688-2 Gene

No Data Available

Interacting Proteins for MIR3688-2 Gene

Gene Ontology (GO) - Biological Process for MIR3688-2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3688-2 Gene

Drugs & Compounds for MIR3688-2 Gene

No Compound Related Data Available

Transcripts for MIR3688-2 Gene

mRNA/cDNA for MIR3688-2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3688-2 Gene

No ASD Table

Relevant External Links for MIR3688-2 Gene

GeneLoc Exon Structure for
MIR3688-2
ECgene alternative splicing isoforms for
MIR3688-2

Expression for MIR3688-2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3688-2 Gene

genes like me logo Genes that share expression patterns with MIR3688-2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3688-2 Gene

Orthologs for MIR3688-2 Gene

Evolution for MIR3688-2 Gene

ENSEMBL:
Gene Tree for MIR3688-2 (if available)
TreeFam:
Gene Tree for MIR3688-2 (if available)

No data available for Orthologs for MIR3688-2 Gene

Paralogs for MIR3688-2 Gene

No data available for Paralogs for MIR3688-2 Gene

Variants for MIR3688-2 Gene

Sequence variations from dbSNP and Humsavar for MIR3688-2 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000966636 -- 159,126,874(+) G/T upstream_transcript_variant
rs1001271497 -- 159,127,065(+) C/T upstream_transcript_variant
rs1002004459 -- 159,127,153(+) A/G upstream_transcript_variant
rs1003114048 -- 159,127,273(+) T/A/C upstream_transcript_variant
rs1003377661 -- 159,127,886(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR3688-2 Gene

Variant ID Type Subtype PubMed ID
nsv4572 CNV insertion 18451855

Additional Variant Information for MIR3688-2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3688-2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3688-2 Gene

Disorders for MIR3688-2 Gene

Additional Disease Information for MIR3688-2

No disorders were found for MIR3688-2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3688-2 Gene

Publications for MIR3688-2 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A … Griffiths-Jones S (Nucleic acids research 2011) 3 58
  2. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H … Rovira C (Cancer research 2011) 3 58
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR3688-2 Gene

Sources for MIR3688-2 Gene

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