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Aliases for MIR3688-1 Gene

Subcategory (RNA class) for MIR3688-1 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3688-1 Gene

  • MicroRNA 3688-1 2 3 5
  • MicroRNA 3688 2 3
  • Hsa-Mir-3688-1 3
  • Hsa-Mir-3688 3
  • Mir-3688-1 3
  • MIR3688 3

External Ids for MIR3688-1 Gene

Previous HGNC Symbols for MIR3688-1 Gene

  • MIR3688

Previous GeneCards Identifiers for MIR3688-1 Gene

  • GC04U901510
  • GC04M160050

Summaries for MIR3688-1 Gene

Entrez Gene Summary for MIR3688-1 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3688-1 Gene

MIR3688-1 (MicroRNA 3688-1) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3688-1 Gene

Genomics for MIR3688-1 Gene

Regulatory Elements for MIR3688-1 Gene

Enhancers for MIR3688-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04F159150 1.3 Ensembl ENCODE 0.3 -22.4 -22379 2.1 PKNOX1 ATF1 ARNT SIN3A YY1 GATA2 CBX5 NCOA1 MBD2 SMARCA4 RAPGEF2 C4orf45 MIR3688-1 GC04P159359
GH04F159130 0.4 ENCODE 0.8 -1.5 -1490 0.2 NR2F1 MIR3688-1 GC04P159359
GH04F159137 0.6 Ensembl 0.4 -8.4 -8407 0.2 ZNF263 HLF PRDM10 ZNF600 ATF2 RAPGEF2 MIR3688-1 GC04P159359
GH04F159174 1.2 Ensembl ENCODE 0.2 -46.4 -46407 2.6 ARID4B ZNF48 ZNF121 GATA2 FOS TSHZ1 REST TBX21 KAT8 SMARCA4 RAPGEF2 C4orf45 PPID MIR3688-1 GC04P159359
GH04F159202 0.9 Ensembl ENCODE 0.2 -74.2 -74207 0.6 CTCF ZNF654 TRIM22 REST ZNF2 RAD21 ZNF664 ZNF610 MBD1 SMC3 C4orf45 RAPGEF2 PPID MIR3688-1 GC04P159359
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3688-1 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3688-1 Gene

Chromosome:
4
Start:
159,128,802 bp from pter
End:
159,128,894 bp from pter
Size:
93 bases
Orientation:
Minus strand

Genomic View for MIR3688-1 Gene

Genes around MIR3688-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3688-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3688-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3688-1 Gene

Proteins for MIR3688-1 Gene

Post-translational modifications for MIR3688-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3688-1 Gene

Domains & Families for MIR3688-1 Gene

Gene Families for MIR3688-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3688-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3688-1 Gene

Function for MIR3688-1 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3688-1 Gene

Localization for MIR3688-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3688-1 Gene

Pathways & Interactions for MIR3688-1 Gene

SuperPathways for MIR3688-1 Gene

No Data Available

Interacting Proteins for MIR3688-1 Gene

Gene Ontology (GO) - Biological Process for MIR3688-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3688-1 Gene

Transcripts for MIR3688-1 Gene

mRNA/cDNA for MIR3688-1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3688-1 Gene

No ASD Table

Relevant External Links for MIR3688-1 Gene

GeneLoc Exon Structure for
MIR3688-1
ECgene alternative splicing isoforms for
MIR3688-1

Expression for MIR3688-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR3688-1 Gene

Orthologs for MIR3688-1 Gene

Evolution for MIR3688-1 Gene

ENSEMBL:
Gene Tree for MIR3688-1 (if available)
TreeFam:
Gene Tree for MIR3688-1 (if available)

No data available for Orthologs for MIR3688-1 Gene

Paralogs for MIR3688-1 Gene

No data available for Paralogs for MIR3688-1 Gene

Variants for MIR3688-1 Gene

Sequence variations from dbSNP and Humsavar for MIR3688-1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs114675649 -- 159,129,409(+) AGGGA(A/G)CACAT intron-variant, upstream-variant-2KB
rs115757964 -- 159,129,564(+) TTTAC(C/T)AATGA intron-variant, upstream-variant-2KB
rs115962290 -- 159,128,323(+) ATTGG(A/C)TCTTA intron-variant, downstream-variant-500B, upstream-variant-2KB
rs116121027 -- 159,129,887(+) AAGAA(C/T)GGCTA intron-variant, upstream-variant-2KB
rs13133931 -- 159,128,921(+) TGGGG(G/T)GTGTG intron-variant, downstream-variant-500B, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3688-1 Gene

Variant ID Type Subtype PubMed ID
nsv4572 CNV insertion 18451855

Relevant External Links for MIR3688-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3688-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3688-1 Gene

Disorders for MIR3688-1 Gene

Relevant External Links for MIR3688-1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3688-1

No disorders were found for MIR3688-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3688-1 Gene

Publications for MIR3688-1 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  2. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H. … Rovira C. (Cancer Res. 2011) 3 64
  3. Analysis of microRNA transcriptome by deep sequencing of small RNA libraries of peripheral blood. (PMID: 20459673) Vaz C. … Bhattacharya A. (BMC Genomics 2010) 3 64
  4. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3688-1 Gene

Sources for MIR3688-1 Gene

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