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Aliases for MIR3683 Gene

Subcategory (RNA class) for MIR3683 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3683 Gene

  • MicroRNA 3683 2 3 5
  • Hsa-Mir-3683 3

External Ids for MIR3683 Gene

Previous GeneCards Identifiers for MIR3683 Gene

  • GC07U903106
  • GC07M007109
  • GC07M007071
  • GC07M007074
  • GC07M007078
  • GC07M007079
  • GC07M007080

Summaries for MIR3683 Gene

Entrez Gene Summary for MIR3683 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3683 Gene

MIR3683 (MicroRNA 3683) is an RNA Gene, and is affiliated with the miRNA class.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3683 Gene

Genomics for MIR3683 Gene

Regulatory Elements for MIR3683 Gene

Enhancers for MIR3683 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G007051 0.6 ENCODE 0.4 +15.5 15477 0.5 IKZF1 RELB DPF2 IKZF2 TBX21 SPI1 ENSG00000272732 ENSG00000272894 MIR3683 PIR57863
GH07G006989 1.1 Ensembl ENCODE 0.2 +75.7 75717 3.3 CTCF HDAC1 MXI1 SAP130 JUN TSC22D4 BMI1 ZNF316 FOXK2 NFE2 ZDHHC4 PIR57863 MIR3683
GH07G007002 0.9 ENCODE 0.2 +64.4 64395 1.0 HDAC1 RB1 ARNT E2F7 CHAMP1 TCF12 GATA2 EGR1 ZBTB2 ZBTB11 PIR57863 MIR3683
GH07G006995 0.8 ENCODE 0.2 +71.3 71251 0.1 HDAC1 PKNOX1 NFRKB ZBTB40 CHAMP1 TCF12 ZNF766 EGR1 ZBTB2 ELF4 PIR57863 MIR3683
GH07G006996 0.8 ENCODE 0.2 +71.5 71502 0.1 LEF1 PKNOX1 TAL1 DDX20 TCF12 FOXM1 EGR1 NCOR1 TRIM24 HES1 PIR57863 MIR3683
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3683 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3683 Gene

Chromosome:
7
Start:
7,066,964 bp from pter
End:
7,067,045 bp from pter
Size:
82 bases
Orientation:
Minus strand

Genomic View for MIR3683 Gene

Genes around MIR3683 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3683 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3683 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3683 Gene

Proteins for MIR3683 Gene

Post-translational modifications for MIR3683 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3683 Gene

Domains & Families for MIR3683 Gene

Gene Families for MIR3683 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3683: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3683 Gene

Function for MIR3683 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3683 Gene

Localization for MIR3683 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3683 Gene

Pathways & Interactions for MIR3683 Gene

SuperPathways for MIR3683 Gene

No Data Available

Interacting Proteins for MIR3683 Gene

Gene Ontology (GO) - Biological Process for MIR3683 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3683 Gene

Drugs & Compounds for MIR3683 Gene

No Compound Related Data Available

Transcripts for MIR3683 Gene

mRNA/cDNA for MIR3683 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3683 Gene

No ASD Table

Relevant External Links for MIR3683 Gene

GeneLoc Exon Structure for
MIR3683
ECgene alternative splicing isoforms for
MIR3683

Expression for MIR3683 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3683 Gene:

MIR3683
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3683 Gene

Orthologs for MIR3683 Gene

Evolution for MIR3683 Gene

ENSEMBL:
Gene Tree for MIR3683 (if available)
TreeFam:
Gene Tree for MIR3683 (if available)

No data available for Orthologs for MIR3683 Gene

Paralogs for MIR3683 Gene

No data available for Paralogs for MIR3683 Gene

Variants for MIR3683 Gene

Sequence variations from dbSNP and Humsavar for MIR3683 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000349713 -- 7,067,842(+) CCCCT(C/T)TATAT intron-variant, upstream-variant-2KB
rs1000603679 -- 7,067,943(+) GGATA(G/T)GATAC intron-variant, upstream-variant-2KB
rs1000975890 -- 7,068,318(+) CTCCC(A/C)ATGTT intron-variant, upstream-variant-2KB
rs1002199379 -- 7,067,365(+) CTGCA(-/G)GGGGT intron-variant, upstream-variant-2KB
rs1002286847 -- 7,066,950(+) CTACT(C/G)CCAGT intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for MIR3683 Gene

Variant ID Type Subtype PubMed ID
dgv6245n100 CNV gain 25217958
dgv6248n100 CNV loss 25217958
dgv6249n100 CNV gain 25217958
esv2752174 CNV gain 17911159
esv2761153 CNV loss 21179565
esv3576288 CNV gain 25503493
esv3612058 CNV gain 21293372
esv3612060 CNV gain 21293372
esv3891032 CNV gain 25118596
nsv1020929 CNV gain 25217958
nsv1023133 CNV gain 25217958
nsv1078578 CNV duplication 25765185
nsv1149206 CNV duplication 26484159
nsv428160 CNV gain+loss 18775914
nsv464298 CNV gain 19166990
nsv464299 CNV loss 19166990
nsv464300 CNV gain 19166990
nsv469900 CNV gain 18288195
nsv469911 CNV loss 18288195
nsv529034 CNV loss 19592680
nsv606031 CNV gain 21841781
nsv606032 CNV loss 21841781
nsv606033 CNV gain 21841781

Relevant External Links for MIR3683 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3683

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3683 Gene

Disorders for MIR3683 Gene

Relevant External Links for MIR3683

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3683

No disorders were found for MIR3683 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3683 Gene

Publications for MIR3683 Gene

  1. Analysis of microRNA transcriptome by deep sequencing of small RNA libraries of peripheral blood. (PMID: 20459673) Vaz C. … Bhattacharya A. (BMC Genomics 2010) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3683 Gene

Sources for MIR3683 Gene

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