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Aliases for MIR3680-1 Gene

Subcategory (RNA class) for MIR3680-1 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR3680-1 Gene

  • MicroRNA 3680-1 2 3 5
  • MicroRNA 3680 2 3
  • Hsa-Mir-3680-1 3
  • Hsa-Mir-3680 3
  • MIR3680 3

External Ids for MIR3680-1 Gene

Previous HGNC Symbols for MIR3680-1 Gene

  • MIR3680

Previous GeneCards Identifiers for MIR3680-1 Gene

  • GC16U901352
  • GC16M021520

Summaries for MIR3680-1 Gene

Entrez Gene Summary for MIR3680-1 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3680-1 Gene

MIR3680-1 (MicroRNA 3680-1) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3680-1 Gene

Genomics for MIR3680-1 Gene

Regulatory Elements for MIR3680-1 Gene

Enhancers for MIR3680-1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
- Elite enhancer/Elite enhancer-gene association

Enhancers around MIR3680-1 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3680-1 Gene

Chromosome:
16
Start:
21,506,049 bp from pter
End:
21,506,135 bp from pter
Size:
87 bases
Orientation:
Minus strand

Genomic View for MIR3680-1 Gene

Genes around MIR3680-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3680-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3680-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3680-1 Gene

ORGUL Member Location for MIR3680-1 Gene

ORGUL Member Location for MIR3680-1 gene

Proteins for MIR3680-1 Gene

Post-translational modifications for MIR3680-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3680-1 Gene

Domains & Families for MIR3680-1 Gene

Gene Families for MIR3680-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3680-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3680-1 Gene

Function for MIR3680-1 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3680-1 Gene

Localization for MIR3680-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3680-1 Gene

Pathways & Interactions for MIR3680-1 Gene

SuperPathways for MIR3680-1 Gene

No Data Available

Interacting Proteins for MIR3680-1 Gene

Gene Ontology (GO) - Biological Process for MIR3680-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3680-1 Gene

Drugs & Compounds for MIR3680-1 Gene

No Compound Related Data Available

Transcripts for MIR3680-1 Gene

mRNA/cDNA for MIR3680-1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3680-1 Gene

No ASD Table

Relevant External Links for MIR3680-1 Gene

GeneLoc Exon Structure for
MIR3680-1
ECgene alternative splicing isoforms for
MIR3680-1

Expression for MIR3680-1 Gene

mRNA expression in normal human tissues for MIR3680-1 Gene

genes like me logo Genes that share expression patterns with MIR3680-1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR3680-1 Gene

Orthologs for MIR3680-1 Gene

Evolution for MIR3680-1 Gene

ENSEMBL:
Gene Tree for MIR3680-1 (if available)
TreeFam:
Gene Tree for MIR3680-1 (if available)

No data available for Orthologs for MIR3680-1 Gene

Paralogs for MIR3680-1 Gene

No data available for Paralogs for MIR3680-1 Gene

Variants for MIR3680-1 Gene

Sequence variations from dbSNP and Humsavar for MIR3680-1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs4080112 -- 21,506,949(-) TGGCA(A/G)GAGCA upstream-variant-2KB
rs150327 -- 21,506,415(-) ggtat(A/G)tgaca upstream-variant-2KB
rs150328 -- 21,507,489(+) ACCAG(C/T)ACCTT upstream-variant-2KB
rs150329 -- 21,507,669(-) GGGCT(A/G)TCTGT upstream-variant-2KB
rs28713414 -- 21,505,924(+) CACAC(A/C)AGGCC downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for MIR3680-1 Gene

Variant ID Type Subtype PubMed ID
dgv1316n106 CNV duplication 24896259
dgv2800n100 CNV gain 25217958
dgv2801n100 CNV loss 25217958
esv2421840 CNV deletion 20811451
esv25717 CNV gain+loss 19812545
esv2758636 CNV gain+loss 17122850
esv2758641 CNV gain 17122850
esv2762010 CNV gain+loss 21179565
esv2763135 CNV gain 21179565
esv29892 CNV gain 19812545
esv32773 CNV loss 17666407
esv33799 CNV loss 17666407
esv34235 CNV gain 17911159
esv3584705 CNV loss 24956385
nsv1056249 CNV gain 25217958
nsv1076422 CNV duplication 25765185
nsv1152437 CNV duplication 26484159
nsv1160372 CNV duplication 26073780
nsv428322 CNV gain 18775914
nsv433437 CNV gain 18776910
nsv433438 CNV gain 18776910
nsv442716 CNV gain 18776908
nsv509606 CNV insertion 20534489
nsv827584 CNV gain 20364138
nsv9397 CNV gain+loss 18304495
nsv9429 CNV loss 18304495
nsv978108 CNV duplication 23825009
nsv978128 CNV duplication 23825009

Relevant External Links for MIR3680-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3680-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3680-1 Gene

Disorders for MIR3680-1 Gene

Relevant External Links for MIR3680-1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3680-1

No disorders were found for MIR3680-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3680-1 Gene

Publications for MIR3680-1 Gene

  1. Analysis of microRNA transcriptome by deep sequencing of small RNA libraries of peripheral blood. (PMID: 20459673) Vaz C. … Bhattacharya A. (BMC Genomics 2010) 3 65
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 65

Products for MIR3680-1 Gene

Sources for MIR3680-1 Gene

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