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Aliases for MIR3679 Gene

Subcategory (RNA class) for MIR3679 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3679 Gene

  • MicroRNA 3679 2 3 5
  • Hsa-Mir-3679 3
  • Mir-3679 3

External Ids for MIR3679 Gene

Previous GeneCards Identifiers for MIR3679 Gene

  • GC02U902266
  • GC02P134887

Summaries for MIR3679 Gene

Entrez Gene Summary for MIR3679 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3679 Gene

MIR3679 (MicroRNA 3679) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3679 Gene

Genomics for MIR3679 Gene

Regulatory Elements for MIR3679 Gene

Enhancers for MIR3679 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F134117 1.5 FANTOM5 ENCODE 0.4 -7.1 -7105 4.1 PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 CCNT2 MGAT5 MIR3679
GH02F134122 0.7 ENCODE 0.8 -2.8 -2760 3.8 CTCF NFIA EBF1 RAD21 YY1 ZFP69B SMARCA4 ZNF692 ZNF341 KLF9 MGAT5 MIR3679
GH02F134131 1.2 Ensembl ENCODE 0.4 +5.2 5176 1.0 ARNT PPARG ATF4 SMARCA4 PBX2 RCOR2 HNF4A KDM1A LEF1 ZNF175 MIR3679 PIR46678
GH02F134127 0.5 ENCODE 0.8 +0.6 560 0.2 ZNF316 POLR2A EMSY MAFK MIR3679 PIR46678
GH02F134133 0.8 Ensembl ENCODE 0.4 +7.2 7150 1.4 ZNF316 ZFP64 HLF ZBTB8A ZNF518A ZNF781 MAFK MIR3679 PIR46678
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3679 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3679 Gene

Chromosome:
2
Start:
134,127,125 bp from pter
End:
134,127,192 bp from pter
Size:
68 bases
Orientation:
Plus strand

Genomic View for MIR3679 Gene

Genes around MIR3679 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3679 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3679 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3679 Gene

Proteins for MIR3679 Gene

Post-translational modifications for MIR3679 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3679 Gene

Domains & Families for MIR3679 Gene

Gene Families for MIR3679 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3679: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3679 Gene

Function for MIR3679 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3679 Gene

Localization for MIR3679 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3679 Gene

Pathways & Interactions for MIR3679 Gene

SuperPathways for MIR3679 Gene

No Data Available

Interacting Proteins for MIR3679 Gene

Gene Ontology (GO) - Biological Process for MIR3679 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3679 Gene

Transcripts for MIR3679 Gene

mRNA/cDNA for MIR3679 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3679 Gene

No ASD Table

Relevant External Links for MIR3679 Gene

GeneLoc Exon Structure for
MIR3679
ECgene alternative splicing isoforms for
MIR3679

Expression for MIR3679 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3679 Gene:

MIR3679
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR3679 Gene

Orthologs for MIR3679 Gene

Evolution for MIR3679 Gene

ENSEMBL:
Gene Tree for MIR3679 (if available)
TreeFam:
Gene Tree for MIR3679 (if available)

No data available for Orthologs for MIR3679 Gene

Paralogs for MIR3679 Gene

No data available for Paralogs for MIR3679 Gene

Variants for MIR3679 Gene

Sequence variations from dbSNP and Humsavar for MIR3679 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs10166640 -- 134,126,735(+) GCTCA(C/T)AGCCT intron-variant, upstream-variant-2KB
rs10175383 -- 134,127,126(+) CCCAC(C/G)TGGTG intron-variant, nc-transcript-variant
rs111962897 -- 134,126,930(+) TGTTA(C/T)TTACA intron-variant, upstream-variant-2KB
rs112394718 -- 134,126,885(+) GCTGC(-/T)TTTTT intron-variant, upstream-variant-2KB
rs112935231 -- 134,127,565(+) GAAAG(A/G)AGTGT intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for MIR3679 Gene

Variant ID Type Subtype PubMed ID
nsv1008965 CNV loss 25217958
dgv7088n54 CNV loss 21841781

Relevant External Links for MIR3679 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3679

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3679 Gene

Disorders for MIR3679 Gene

Relevant External Links for MIR3679

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3679

No disorders were found for MIR3679 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3679 Gene

Publications for MIR3679 Gene

  1. Salivary microRNAs show potential as a noninvasive biomarker for detecting resectable pancreatic cancer. (PMID: 25538087) Xie Z. … Li Z. (Cancer Prev Res (Phila) 2015) 3 64
  2. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  3. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H. … Rovira C. (Cancer Res. 2011) 3 64
  4. Analysis of microRNA transcriptome by deep sequencing of small RNA libraries of peripheral blood. (PMID: 20459673) Vaz C. … Bhattacharya A. (BMC Genomics 2010) 3 64
  5. Discovery of novel microRNAs in female reproductive tract using next generation sequencing. (PMID: 20224791) Creighton C.J. … Gunaratne P.H. (PLoS ONE 2010) 3 64

Products for MIR3679 Gene

Sources for MIR3679 Gene

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