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Aliases for MIR3662 Gene

Subcategory (RNA class) for MIR3662 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR3662 Gene

  • MicroRNA 3662 2 3 5
  • Hsa-Mir-3662 3
  • Mir-3662 3

External Ids for MIR3662 Gene

Previous GeneCards Identifiers for MIR3662 Gene

  • GC06U902106
  • GC06M135302

Summaries for MIR3662 Gene

Entrez Gene Summary for MIR3662 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3662 Gene

MIR3662 (MicroRNA 3662) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3662 Gene

Genomics for MIR3662 Gene

Regulatory Elements for MIR3662 Gene

Enhancers for MIR3662 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F134983 0.8 ENCODE 0.8 -4.6 -4626 0.2 HDAC1 TAL1 CHAMP1 NCOR1 TRIM24 SMARCE1 MTA2 RNF2 NCOA1 DPF2 MIR3662 GC06M135032
GH06F135013 1 Ensembl ENCODE 0.3 -34.7 -34709 2.3 PKNOX1 BMI1 CBX5 EED ETV6 CREM MTA2 CBFB TRIM22 JUNB ALDH8A1 ENSG00000240056 HBS1L GC06M135032 MIR3662
GH06F135007 0.9 ENCODE 0.3 -29.2 -29216 1.9 PKNOX1 MLX CBX5 ELK1 ZNF207 ETV6 CREM MIXL1 CBFB JUNB ALDH8A1 ENSG00000240056 MIR3662 GC06M135032
GH06F135029 0.8 ENCODE 0.2 -51.1 -51103 1.3 HDGF TBP MXI1 ZMYM3 BMI1 FEZF1 EBF1 RELA ZNF316 EED ALDH8A1 GC06M135032 MIR3662
GH06F135018 0.5 Ensembl 0.3 -39.8 -39769 0.8 GATA3 ZBTB33 CHAMP1 HBS1L GC06M135032 MIR3662
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3662 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3662 Gene

Chromosome:
6
Start:
134,979,338 bp from pter
End:
134,979,432 bp from pter
Size:
95 bases
Orientation:
Minus strand

Genomic View for MIR3662 Gene

Genes around MIR3662 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3662 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3662 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3662 Gene

ORGUL Member Location for MIR3662 Gene

ORGUL Member Location for MIR3662 gene

Proteins for MIR3662 Gene

Post-translational modifications for MIR3662 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3662 Gene

Domains & Families for MIR3662 Gene

Gene Families for MIR3662 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3662: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3662 Gene

Function for MIR3662 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3662 Gene

Localization for MIR3662 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3662 Gene

Pathways & Interactions for MIR3662 Gene

SuperPathways for MIR3662 Gene

No Data Available

Interacting Proteins for MIR3662 Gene

Gene Ontology (GO) - Biological Process for MIR3662 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3662 Gene

Transcripts for MIR3662 Gene

mRNA/cDNA for MIR3662 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3662 Gene

No ASD Table

Relevant External Links for MIR3662 Gene

GeneLoc Exon Structure for
MIR3662
ECgene alternative splicing isoforms for
MIR3662

Expression for MIR3662 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3662 Gene:

MIR3662
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR3662 Gene

Orthologs for MIR3662 Gene

Evolution for MIR3662 Gene

ENSEMBL:
Gene Tree for MIR3662 (if available)
TreeFam:
Gene Tree for MIR3662 (if available)

No data available for Orthologs for MIR3662 Gene

Paralogs for MIR3662 Gene

No data available for Paralogs for MIR3662 Gene

Variants for MIR3662 Gene

Sequence variations from dbSNP and Humsavar for MIR3662 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs111711478 -- 134,979,097(+) TGAAC(C/T)AGCAG intron-variant, downstream-variant-500B
rs112042595 -- 134,980,247(+) CTGAC(-/T)TTTAG intron-variant, upstream-variant-2KB
rs112876647 -- 134,979,297(-) TTCAC(C/T)GTATG intron-variant, downstream-variant-500B
rs117905199 -- 134,979,398(+) GAGAG(C/T)AAGAA intron-variant, nc-transcript-variant
rs11961397 -- 134,981,154(+) TAGGA(C/T)CATGG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3662 Gene

Variant ID Type Subtype PubMed ID
nsv464063 CNV gain 19166990
nsv604723 CNV gain 21841781

Relevant External Links for MIR3662 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3662

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3662 Gene

Disorders for MIR3662 Gene

Relevant External Links for MIR3662

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3662

No disorders were found for MIR3662 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3662 Gene

Publications for MIR3662 Gene

  1. Plasma circulating microRNA-944 and microRNA-3662 as potential histologic type-specific early lung cancer biomarkers. (PMID: 26079400) PowrA^zek T. … Milanowski J. (Transl Res 2015) 3 64
  2. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  3. Re-inspection of small RNA sequence datasets reveals several novel human miRNA genes. (PMID: 20532037) Hansen T.B. … Kjems J. (PLoS ONE 2010) 3 64
  4. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3662 Gene

Sources for MIR3662 Gene

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