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Aliases for MIR3660 Gene

Subcategory (RNA class) for MIR3660 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR3660 Gene

  • MicroRNA 3660 2 3 5
  • Hsa-Mir-3660 3
  • Mir-3660 3

External Ids for MIR3660 Gene

Previous GeneCards Identifiers for MIR3660 Gene

  • GC05U901499
  • GC05M089314

Summaries for MIR3660 Gene

Entrez Gene Summary for MIR3660 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3660 Gene

MIR3660 (MicroRNA 3660) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3660 Gene

Genomics for MIR3660 Gene

Regulatory Elements for MIR3660 Gene

Enhancers for MIR3660 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F090020 1.1 Ensembl ENCODE 0.8 -4.7 -4739 1.8 PKNOX1 TBL1XR1 ZFP64 BMI1 ZNF138 CBX5 ZNF354C ETV6 FOS CREM MBLAC2 LYSMD3 MIR3660 GC05M090101
GH05F090014 1.2 Ensembl ENCODE 0.8 +1.2 1246 1.7 MTA2 CBFB JUNB EBF1 TBX21 EP300 ZNF316 JUND CBX5 IKZF1 MIR3660 ENSG00000249265
GH05F090017 0.3 FANTOM5 0.8 -1.1 -1089 0.3 CBX5 ASH2L RBBP5 SP7 MIR3660 GC05M090101
GH05F089989 0.2 ENCODE 0.3 +26.7 26682 0.2 MIR3660 ENSG00000249265
GH05F089988 0.2 Ensembl 0.3 +27.6 27619 0.6 NR2F2 MIR3660 ENSG00000249265
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MIR3660 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3660 Gene

Chromosome:
5
Start:
90,016,621 bp from pter
End:
90,016,720 bp from pter
Size:
100 bases
Orientation:
Minus strand

Genomic View for MIR3660 Gene

Genes around MIR3660 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3660 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3660 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3660 Gene

ORGUL Member Location for MIR3660 Gene

ORGUL Member Location for MIR3660 gene

Proteins for MIR3660 Gene

Post-translational modifications for MIR3660 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3660 Gene

Domains & Families for MIR3660 Gene

Gene Families for MIR3660 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3660: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3660 Gene

Function for MIR3660 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3660 Gene

Localization for MIR3660 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3660 Gene

Pathways & Interactions for MIR3660 Gene

SuperPathways for MIR3660 Gene

No Data Available

Interacting Proteins for MIR3660 Gene

Gene Ontology (GO) - Biological Process for MIR3660 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3660 Gene

Transcripts for MIR3660 Gene

mRNA/cDNA for MIR3660 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3660 Gene

No ASD Table

Relevant External Links for MIR3660 Gene

GeneLoc Exon Structure for
MIR3660
ECgene alternative splicing isoforms for
MIR3660

Expression for MIR3660 Gene

mRNA expression in normal human tissues for MIR3660 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3660 Gene:

MIR3660
genes like me logo Genes that share expression patterns with MIR3660: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR3660 Gene

Orthologs for MIR3660 Gene

Evolution for MIR3660 Gene

ENSEMBL:
Gene Tree for MIR3660 (if available)
TreeFam:
Gene Tree for MIR3660 (if available)

No data available for Orthologs for MIR3660 Gene

Paralogs for MIR3660 Gene

No data available for Paralogs for MIR3660 Gene

Variants for MIR3660 Gene

Sequence variations from dbSNP and Humsavar for MIR3660 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs10547444 -- 90,017,229(+) AAACT(-/CT)ATCTG upstream-variant-2KB
rs113246156 -- 90,016,491(+) TATAC(C/T)GAGGT downstream-variant-500B
rs113998207 -- 90,018,487(+) TGACT(A/G)ACACT upstream-variant-2KB
rs11424915 -- 90,016,393(+) TTTTT(-/T)AATTA downstream-variant-500B
rs115032356 -- 90,017,501(+) TATGA(G/T)AACTT upstream-variant-2KB

Relevant External Links for MIR3660 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3660

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for MIR3660 Gene

Disorders for MIR3660 Gene

Relevant External Links for MIR3660

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3660

No disorders were found for MIR3660 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3660 Gene

Publications for MIR3660 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  2. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H. … Rovira C. (Cancer Res. 2011) 3 64
  3. Re-inspection of small RNA sequence datasets reveals several novel human miRNA genes. (PMID: 20532037) Hansen T.B. … Kjems J. (PLoS ONE 2010) 3 64
  4. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3660 Gene

Sources for MIR3660 Gene

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