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Aliases for MIR3656 Gene

Subcategory (RNA class) for MIR3656 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3656 Gene

  • MicroRNA 3656 2 3 5
  • Hsa-Mir-3656 3
  • Mir-3656 3

External Ids for MIR3656 Gene

Previous GeneCards Identifiers for MIR3656 Gene

  • GC11U901768
  • GC11P118896
  • GC11P119020
  • GC11P119024
  • GC11P119027
  • GC11P119031
  • GC11P119036

Summaries for MIR3656 Gene

Entrez Gene Summary for MIR3656 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3656 Gene

MIR3656 (MicroRNA 3656) is an RNA Gene, and is affiliated with the miRNA class. Among its related pathways are Vesicle-mediated transport and Transport to the Golgi and subsequent modification.

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3656 Gene

Genomics for MIR3656 Gene

Regulatory Elements for MIR3656 Gene

Enhancers for MIR3656 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G119020 0.9 ENCODE 0.7 +2.7 2724 1.9 ELF3 PKNOX1 FOXA2 RARA YY1 GATA4 IKZF2 CREM HMG20B CEBPB TRAPPC4 RPS25 MIR3656 SLC37A4
GH11G119024 1.1 ENCODE 0.4 +9.0 8989 7.3 HDGF PKNOX1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 KLF13 TRAPPC4 VPS11 SLC37A4 MIR3656
GH11G119023 0.6 ENCODE 0.4 +5.0 5022 0.2 OSR2 HIC1 ZNF687 GATA2 GLIS1 FEZF1 MIR3656 SLC37A4
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3656 on UCSC Golden Path with GeneCards custom track

Promoters for MIR3656 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000045715 -344 2801 HDGF PKNOX1 CREB3L1 ARNT AGO1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1

Genomic Location for MIR3656 Gene

Chromosome:
11
Start:
119,018,944 bp from pter
End:
119,019,012 bp from pter
Size:
69 bases
Orientation:
Plus strand

Genomic View for MIR3656 Gene

Genes around MIR3656 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3656 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3656 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3656 Gene

Proteins for MIR3656 Gene

Post-translational modifications for MIR3656 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3656 Gene

Domains & Families for MIR3656 Gene

Gene Families for MIR3656 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3656: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3656 Gene

Function for MIR3656 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3656 Gene

Localization for MIR3656 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3656 Gene

Drugs & Compounds for MIR3656 Gene

No Compound Related Data Available

Transcripts for MIR3656 Gene

mRNA/cDNA for MIR3656 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3656 Gene

No ASD Table

Relevant External Links for MIR3656 Gene

GeneLoc Exon Structure for
MIR3656
ECgene alternative splicing isoforms for
MIR3656

Expression for MIR3656 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3656 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3656 Gene:

MIR3656
genes like me logo Genes that share expression patterns with MIR3656: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3656 Gene

Orthologs for MIR3656 Gene

Evolution for MIR3656 Gene

ENSEMBL:
Gene Tree for MIR3656 (if available)
TreeFam:
Gene Tree for MIR3656 (if available)

No data available for Orthologs for MIR3656 Gene

Paralogs for MIR3656 Gene

No data available for Paralogs for MIR3656 Gene

Variants for MIR3656 Gene

Sequence variations from dbSNP and Humsavar for MIR3656 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000730956 -- 119,017,219(+) AAGAC(A/G)TCAGA intron-variant, upstream-variant-2KB
rs1001022384 -- 119,018,706(+) GCTGG(G/T)GTGGG upstream-variant-2KB, utr-variant-5-prime
rs1001474460 -- 119,018,506(+) CCTAA(A/G)TACTG upstream-variant-2KB, utr-variant-5-prime
rs1001527529 -- 119,017,265(+) TTTTT(C/T)TTTTA intron-variant, upstream-variant-2KB
rs1001558402 -- 119,017,693(+) CACCG(A/G)CACGT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3656 Gene

Variant ID Type Subtype PubMed ID
nsv826101 CNV gain 20364138

Relevant External Links for MIR3656 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3656

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3656 Gene

Disorders for MIR3656 Gene

Relevant External Links for MIR3656

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3656

No disorders were found for MIR3656 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3656 Gene

Publications for MIR3656 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  2. Discovery of microRNAs and other small RNAs in solid tumors. (PMID: 20483914) Meiri E. … Sitbon E. (Nucleic Acids Res. 2010) 3 64
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3656 Gene

Sources for MIR3656 Gene

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