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Aliases for MIR3650 Gene

Subcategory (RNA class) for MIR3650 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3650 Gene

  • MicroRNA 3650 2 3 5
  • Hsa-Mir-3650 3

External Ids for MIR3650 Gene

Previous GeneCards Identifiers for MIR3650 Gene

  • GC05U901502
  • GC05P038558

Summaries for MIR3650 Gene

Entrez Gene Summary for MIR3650 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3650 Gene

MIR3650 (MicroRNA 3650) is an RNA Gene, and is affiliated with the miRNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3650 Gene

Genomics for MIR3650 Gene

Regulatory Elements for MIR3650 Gene

Enhancers for MIR3650 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F038555 0.7 ENCODE 0.8 +0.7 727 2.4 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 ZNF263 SP3 REST SMARCB1 LIFR LOC105374732 EGFLAM-AS1 ENSG00000248234 EGFLAM-AS2 EGFLAM LIFR-AS1 MIR3650
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MIR3650 on UCSC Golden Path with GeneCards custom track

Promoters for MIR3650 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001278526 1460 3799 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 ZNF263 SP3 REST SMARCB1

Genomic Location for MIR3650 Gene

Chromosome:
5
Start:
38,557,502 bp from pter
End:
38,557,561 bp from pter
Size:
60 bases
Orientation:
Minus strand

Genomic View for MIR3650 Gene

Genes around MIR3650 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3650 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3650 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3650 Gene

Proteins for MIR3650 Gene

Post-translational modifications for MIR3650 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3650 Gene

Domains & Families for MIR3650 Gene

Gene Families for MIR3650 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3650: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3650 Gene

Function for MIR3650 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3650 Gene

Localization for MIR3650 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3650 Gene

Pathways & Interactions for MIR3650 Gene

SuperPathways for MIR3650 Gene

No Data Available

Interacting Proteins for MIR3650 Gene

Gene Ontology (GO) - Biological Process for MIR3650 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3650 Gene

Transcripts for MIR3650 Gene

mRNA/cDNA for MIR3650 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3650 Gene

No ASD Table

Relevant External Links for MIR3650 Gene

GeneLoc Exon Structure for
MIR3650
ECgene alternative splicing isoforms for
MIR3650

Expression for MIR3650 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3650 Gene:

MIR3650
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR3650 Gene

Orthologs for MIR3650 Gene

Evolution for MIR3650 Gene

ENSEMBL:
Gene Tree for MIR3650 (if available)
TreeFam:
Gene Tree for MIR3650 (if available)

No data available for Orthologs for MIR3650 Gene

Paralogs for MIR3650 Gene

No data available for Paralogs for MIR3650 Gene

Variants for MIR3650 Gene

Sequence variations from dbSNP and Humsavar for MIR3650 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs112200843 -- 38,558,077(+) AAAAT(A/G)TTTTA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs113256053 -- 38,558,057(+) ATATT(C/T)TTAGA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs115248736 -- 38,557,988(+) TTTAT(C/T)ATTAT intron-variant, nc-transcript-variant, upstream-variant-2KB
rs11954556 -- 38,557,227(+) CGCGC(C/G)GAGAG intron-variant, nc-transcript-variant, downstream-variant-500B, upstream-variant-2KB, utr-variant-5-prime
rs138852745 -- 38,559,244(+) AGGTA(C/G)AATTT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3650 Gene

Variant ID Type Subtype PubMed ID
esv3604761 CNV gain 21293372

Relevant External Links for MIR3650 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3650

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3650 Gene

Disorders for MIR3650 Gene

Relevant External Links for MIR3650

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3650

No disorders were found for MIR3650 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3650 Gene

Publications for MIR3650 Gene

  1. Discovery of microRNAs and other small RNAs in solid tumors. (PMID: 20483914) Meiri E. … Sitbon E. (Nucleic Acids Res. 2010) 3 64
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3650 Gene

Sources for MIR3650 Gene

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