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Aliases for MIR3648-1 Gene

Subcategory (RNA class) for MIR3648-1 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3648-1 Gene

  • MicroRNA 3648-1 2 3 5
  • MicroRNA 3648 2 3
  • Hsa-Mir-3648-1 3
  • Hsa-Mir-3648 3
  • MIR3648 3

External Ids for MIR3648-1 Gene

Previous HGNC Symbols for MIR3648-1 Gene

  • MIR3648

Previous GeneCards Identifiers for MIR3648-1 Gene

  • GC21P008988

Summaries for MIR3648-1 Gene

Entrez Gene Summary for MIR3648-1 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3648-1 Gene

MIR3648-1 (MicroRNA 3648-1) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3648-1 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3648-1 Gene

Genomics for MIR3648-1 Gene

Genomic Locations for MIR3648-1 Gene

Genomic Locations for MIR3648-1 Gene
chr21:8,208,473-8,208,652
(GRCh38/hg38)
Size:
180 bases
Orientation:
Plus strand

Genomic View for MIR3648-1 Gene

Genes around MIR3648-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3648-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3648-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3648-1 Gene

No data available for GeneHancer (GH) Regulatory Elements for MIR3648-1 Gene

Proteins for MIR3648-1 Gene

Post-translational modifications for MIR3648-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3648-1 Gene

Domains & Families for MIR3648-1 Gene

Gene Families for MIR3648-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3648-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3648-1 Gene

Function for MIR3648-1 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3648-1 Gene

Localization for MIR3648-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3648-1 Gene

Pathways & Interactions for MIR3648-1 Gene

SuperPathways for MIR3648-1 Gene

No Data Available

Interacting Proteins for MIR3648-1 Gene

Gene Ontology (GO) - Biological Process for MIR3648-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3648-1 Gene

Drugs & Compounds for MIR3648-1 Gene

No Compound Related Data Available

Transcripts for MIR3648-1 Gene

mRNA/cDNA for MIR3648-1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3648-1 Gene

No ASD Table

Relevant External Links for MIR3648-1 Gene

GeneLoc Exon Structure for
MIR3648-1
ECgene alternative splicing isoforms for
MIR3648-1

Expression for MIR3648-1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3648-1 Gene

genes like me logo Genes that share expression patterns with MIR3648-1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3648-1 Gene

Orthologs for MIR3648-1 Gene

Evolution for MIR3648-1 Gene

ENSEMBL:
Gene Tree for MIR3648-1 (if available)
TreeFam:
Gene Tree for MIR3648-1 (if available)

No data available for Orthologs for MIR3648-1 Gene

Paralogs for MIR3648-1 Gene

No data available for Paralogs for MIR3648-1 Gene

Variants for MIR3648-1 Gene

Sequence variations from dbSNP and Humsavar for MIR3648-1 Gene

SNP ID Clin Chr 21 pos Variation AA Info Type
rs879183980 -- 8,208,385(+) C/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR3648-1 Gene

Variant ID Type Subtype PubMed ID
esv2723012 CNV deletion 23290073
nsv1147094 CNV duplication 26484159
nsv953321 CNV duplication 24416366

Additional Variant Information for MIR3648-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3648-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3648-1 Gene

Disorders for MIR3648-1 Gene

Additional Disease Information for MIR3648-1

No disorders were found for MIR3648-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3648-1 Gene

Publications for MIR3648-1 Gene

  1. Discovery of microRNAs and other small RNAs in solid tumors. (PMID: 20483914) Meiri E … Sitbon E (Nucleic acids research 2010) 3 58
  2. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58
  3. RNA-binding activity of TRIM25 is mediated by its PRY/SPRY domain and is required for ubiquitination. (PMID: 29117863) Choudhury NR … Michlewski G (BMC biology 2017) 3

Products for MIR3648-1 Gene

Sources for MIR3648-1 Gene

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