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Aliases for MIR3620 Gene

Subcategory (RNA class) for MIR3620 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3620 Gene

  • MicroRNA 3620 2 3 5
  • Hsa-Mir-3620 3
  • Mir-3620 3

External Ids for MIR3620 Gene

Previous GeneCards Identifiers for MIR3620 Gene

  • GC01U903105
  • GC01P228288

Summaries for MIR3620 Gene

Entrez Gene Summary for MIR3620 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3620 Gene

MIR3620 (MicroRNA 3620) is an RNA Gene, and is affiliated with the miRNA class. Among its related pathways are Clathrin derived vesicle budding and Transport to the Golgi and subsequent modification.

Additional gene information for MIR3620 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3620 Gene

Genomics for MIR3620 Gene

GeneHancer (GH) Regulatory Elements for MIR3620 Gene

Promoters and enhancers for MIR3620 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I228096 Enhancer 0.5 ENCODE 550.8 -1.2 -1155 0.1 ZFHX2 POLR2A ZNF837 ZNF18 EGR2 MIR3620 MRPL55 ARF1
GH01I228081 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 0.4 -10.7 -10708 10.7 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 POLR2B ARF1 CICP26 ENSG00000269890 ZNF678 C1orf35 OBSCN CDC42BPA WNT3A ENSG00000269934 OBSCN-AS1
GH01I228100 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.4 +5.4 5407 3.7 HDGF PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 C1orf35 GC01P228103 ZNF678 CDC42BPA CICP26 ARF1 OBSCN ENSG00000269890 OBSCN-AS1 MIR3620
GH01I228092 Enhancer 0.5 dbSUPER 0.8 -4.6 -4558 0.9 SMARCE1 POLR2A DPF2 ZNF560 IBA57-AS1 RPL23AP15 HIST3H2A HIST3H2BB MIR3620 ARF1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR3620 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR3620 Gene

Genomic Locations for MIR3620 Gene
chr1:228,097,263-228,097,341
(GRCh38/hg38)
Size:
79 bases
Orientation:
Plus strand
chr1:228,284,964-228,285,042
(GRCh37/hg19)

Genomic View for MIR3620 Gene

Genes around MIR3620 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3620 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3620 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3620 Gene

Proteins for MIR3620 Gene

Post-translational modifications for MIR3620 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3620 Gene

Domains & Families for MIR3620 Gene

Gene Families for MIR3620 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3620: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3620 Gene

Function for MIR3620 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3620 Gene

Localization for MIR3620 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3620 Gene

Pathways & Interactions for MIR3620 Gene

genes like me logo Genes that share pathways with MIR3620: view

Interacting Proteins for MIR3620 Gene

Gene Ontology (GO) - Biological Process for MIR3620 Gene

None

No data available for SIGNOR curated interactions for MIR3620 Gene

Drugs & Compounds for MIR3620 Gene

No Compound Related Data Available

Transcripts for MIR3620 Gene

mRNA/cDNA for MIR3620 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3620 Gene

No ASD Table

Relevant External Links for MIR3620 Gene

GeneLoc Exon Structure for
MIR3620
ECgene alternative splicing isoforms for
MIR3620

Expression for MIR3620 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3620 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3620 Gene:

MIR3620
genes like me logo Genes that share expression patterns with MIR3620: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3620 Gene

Orthologs for MIR3620 Gene

Evolution for MIR3620 Gene

ENSEMBL:
Gene Tree for MIR3620 (if available)
TreeFam:
Gene Tree for MIR3620 (if available)

No data available for Orthologs for MIR3620 Gene

Paralogs for MIR3620 Gene

No data available for Paralogs for MIR3620 Gene

Variants for MIR3620 Gene

Sequence variations from dbSNP and Humsavar for MIR3620 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000058274 -- 228,095,281(+) T/G upstream_transcript_variant
rs1000671194 -- 228,097,498(+) A/G downstream_transcript_variant
rs1002341935 -- 228,096,040(+) C/T upstream_transcript_variant
rs1005918915 -- 228,095,866(+) G/A upstream_transcript_variant
rs1006935617 -- 228,096,537(+) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR3620 Gene

Variant ID Type Subtype PubMed ID
esv32853 CNV gain 17666407
nsv1160102 CNV deletion 26073780
nsv516409 CNV loss 19592680
nsv523935 CNV loss 19592680
nsv826908 CNV gain 20364138
nsv832803 CNV loss 17160897
nsv952136 CNV deletion 24416366

Additional Variant Information for MIR3620 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3620

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3620 Gene

Disorders for MIR3620 Gene

Additional Disease Information for MIR3620

No disorders were found for MIR3620 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3620 Gene

Publications for MIR3620 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A … Griffiths-Jones S (Nucleic acids research 2011) 3 58
  2. Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls. (PMID: 20459774) Witten D … Lui WO (BMC biology 2010) 3 58
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 58

Products for MIR3620 Gene

Sources for MIR3620 Gene

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