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Aliases for MIR3616 Gene

Subcategory (RNA class) for MIR3616 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3616 Gene

  • MicroRNA 3616 2 3 5
  • Hsa-Mir-3616 3
  • Mir-3616 3

External Ids for MIR3616 Gene

Previous GeneCards Identifiers for MIR3616 Gene

  • GC20U900639
  • GC20P045798

Summaries for MIR3616 Gene

Entrez Gene Summary for MIR3616 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3616 Gene

MIR3616 (MicroRNA 3616) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR3616 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3616 Gene

Genomics for MIR3616 Gene

Regulatory Elements for MIR3616 Gene

Enhancers for MIR3616 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20H047181 1.2 Ensembl ENCODE 0.4 +14.6 14616 1 ELF3 PKNOX1 ATF1 FOXA2 ARID4B ZNF76 ZBTB40 ETS1 SCRT2 ZNF207 MIR3616 GC20M047253
GH20H047196 1.5 Ensembl ENCODE dbSUPER 0.3 +29.6 29609 0.8 HDGF MLX ARID4B ZNF2 ZNF121 SLC30A9 ZNF143 ZNF207 ATF7 RUNX3 RNU6-497P RPL35AP MIR3616 GC20M047253
GH20H047204 1.4 Ensembl ENCODE dbSUPER 0.3 +38.8 38848 3.6 HDAC1 FOXA2 MLX ARID4B BATF RAD21 RARA ZNF143 FOS CEBPB MIR3616 GC20M047253
GH20H047202 1.1 ENCODE dbSUPER 0.3 +36.2 36215 1.3 SOX13 TBP FOXA2 ZNF792 SAP130 ARID4B DMAP1 ZNF384 DNMT3B ZSCAN9 MIR3616 GC20M047253
GH20H047200 1 ENCODE 0.3 +34.0 33975 1.7 FOXA2 ATF1 ARID4B TCF12 GTF3C2 ZNF766 ATF7 SP5 ZNF592 MEF2D SLC35C2 TP53RK NCOA3 LOC100419565 RPL35AP RNU6-497P MIR3616 GC20M047253
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3616 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR3616 Gene

Genomic Locations for MIR3616 Gene
chr20:47,166,967-47,167,058
(GRCh38/hg38)
Size:
92 bases
Orientation:
Plus strand
chr20:45,795,609-45,795,700
(GRCh37/hg19)

Genomic View for MIR3616 Gene

Genes around MIR3616 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3616 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3616 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3616 Gene

Proteins for MIR3616 Gene

Post-translational modifications for MIR3616 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3616 Gene

Domains & Families for MIR3616 Gene

Gene Families for MIR3616 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3616: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3616 Gene

Function for MIR3616 Gene

Phenotypes From GWAS Catalog for MIR3616 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3616 Gene

Localization for MIR3616 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for MIR3616 Gene

Pathways & Interactions for MIR3616 Gene

SuperPathways for MIR3616 Gene

No Data Available

Interacting Proteins for MIR3616 Gene

Gene Ontology (GO) - Biological Process for MIR3616 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3616 Gene

Drugs & Compounds for MIR3616 Gene

No Compound Related Data Available

Transcripts for MIR3616 Gene

mRNA/cDNA for MIR3616 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3616 Gene

No ASD Table

Relevant External Links for MIR3616 Gene

GeneLoc Exon Structure for
MIR3616
ECgene alternative splicing isoforms for
MIR3616

Expression for MIR3616 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3616 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3616 Gene:

MIR3616
genes like me logo Genes that share expression patterns with MIR3616: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3616 Gene

Orthologs for MIR3616 Gene

Evolution for MIR3616 Gene

ENSEMBL:
Gene Tree for MIR3616 (if available)
TreeFam:
Gene Tree for MIR3616 (if available)

No data available for Orthologs for MIR3616 Gene

Paralogs for MIR3616 Gene

No data available for Paralogs for MIR3616 Gene

Variants for MIR3616 Gene

Sequence variations from dbSNP and Humsavar for MIR3616 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1001104828 -- 47,166,568(+) GAGTC(C/G)CACGT intron-variant, upstream-variant-2KB
rs1002428740 -- 47,167,269(+) AGAAT(C/T)GGTTT intron-variant, downstream-variant-500B
rs1004430138 -- 47,165,541(+) GTTGG(G/T)CTCCA intron-variant, upstream-variant-2KB
rs1004997489 -- 47,166,226(+) AAAAC(C/G)TCATC intron-variant, upstream-variant-2KB
rs1005404243 -- 47,166,495(+) TTCTT(C/G/T)CAATT intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3616 Gene

Variant ID Type Subtype PubMed ID
esv33497 CNV loss 17666407
nsv1061899 CNV loss 25217958

Relevant External Links for MIR3616 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3616

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3616 Gene

Disorders for MIR3616 Gene

Relevant External Links for MIR3616

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3616

No disorders were found for MIR3616 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3616 Gene

Publications for MIR3616 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A … Griffiths-Jones S (Nucleic acids research 2011) 3 60
  2. Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls. (PMID: 20459774) Witten D … Lui WO (BMC biology 2010) 3 60
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S … Enright AJ (Nucleic acids research 2006) 3 60

Products for MIR3616 Gene

Sources for MIR3616 Gene

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