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Aliases for MIR3613 Gene

Subcategory (RNA class) for MIR3613 Gene

miRNA

Quality Score for this RNA gene is

3.2

Aliases for MIR3613 Gene

  • MicroRNA 3613 2 3 5
  • Hsa-Mir-3613 3

External Ids for MIR3613 Gene

Previous GeneCards Identifiers for MIR3613 Gene

  • GC13U900807
  • GC13M050574

Summaries for MIR3613 Gene

Entrez Gene Summary for MIR3613 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3613 Gene

MIR3613 (MicroRNA 3613) is an RNA Gene, and is affiliated with the miRNA class.

fRNAdb sequence ontologies for MIR3613 Gene

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

View fRNAdb secondary structures for MIR3613

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MIR3613 Gene

Genomics for MIR3613 Gene

Regulatory Elements for MIR3613 Gene

Enhancers for MIR3613 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13G049995 1.1 ENCODE 0.7 -1.0 -1002 4.4 CREB3L1 ARID4B SIN3A DMAP1 ZBTB7B YY1 ZNF766 ZNF143 ZNF207 SP5 TRIM13 DLEU1 EBPL SPRYD7 CTAGE10P RNASEH2B MIR3613 KCNRG
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3613 on UCSC Golden Path with GeneCards custom track

Promoters for MIR3613 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000062794 -799 2601 ARID4B SIN3A DMAP1 ZBTB7B YY1 ZNF766 ZNF143 ZNF207 SP5 ZHX2

Genomic Location for MIR3613 Gene

Chromosome:
13
Start:
49,996,415 bp from pter
End:
49,996,501 bp from pter
Size:
87 bases
Orientation:
Minus strand

Genomic View for MIR3613 Gene

Genes around MIR3613 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3613 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3613 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3613 Gene

ORGUL Member Location for MIR3613 Gene

ORGUL Member Location for MIR3613 gene

Proteins for MIR3613 Gene

Post-translational modifications for MIR3613 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3613 Gene

Domains & Families for MIR3613 Gene

Gene Families for MIR3613 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3613: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3613 Gene

Function for MIR3613 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3613 Gene

Localization for MIR3613 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3613 Gene

Pathways & Interactions for MIR3613 Gene

SuperPathways for MIR3613 Gene

No Data Available

Interacting Proteins for MIR3613 Gene

Gene Ontology (GO) - Biological Process for MIR3613 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR3613 Gene

Drugs & Compounds for MIR3613 Gene

No Compound Related Data Available

Transcripts for MIR3613 Gene

fRNAdb Secondary structures for MIR3613 Gene

  • FR300064

mRNA/cDNA for MIR3613 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3613 Gene

No ASD Table

Relevant External Links for MIR3613 Gene

GeneLoc Exon Structure for
MIR3613
ECgene alternative splicing isoforms for
MIR3613

Expression for MIR3613 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3613 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3613 Gene:

MIR3613
genes like me logo Genes that share expression patterns with MIR3613: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3613 Gene

Orthologs for MIR3613 Gene

Evolution for MIR3613 Gene

ENSEMBL:
Gene Tree for MIR3613 (if available)
TreeFam:
Gene Tree for MIR3613 (if available)

No data available for Orthologs for MIR3613 Gene

Paralogs for MIR3613 Gene

No data available for Paralogs for MIR3613 Gene

Variants for MIR3613 Gene

Sequence variations from dbSNP and Humsavar for MIR3613 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs1001758007 -- 49,998,199(+) ACTTC(C/T)TTCTT intron-variant, upstream-variant-2KB
rs1002388596 -- 49,997,480(+) GTTGC(A/G)TGGCG intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1002810375 -- 49,997,387(+) GAGCC(C/T)TCCTG intron-variant, nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs1003787296 -- 49,995,992(+) ATTGG(A/G)CAAGG intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1004457149 -- 49,996,713(+) CCGCG(A/C)GGGTG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3613 Gene

Variant ID Type Subtype PubMed ID
nsv1035151 CNV loss 25217958
nsv1118263 CNV deletion 24896259
nsv561618 CNV loss 21841781

Relevant External Links for MIR3613 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3613

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3613 Gene

Disorders for MIR3613 Gene

Relevant External Links for MIR3613

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3613

No disorders were found for MIR3613 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3613 Gene

Publications for MIR3613 Gene

  1. Monocyte Chemoattractant Protein-Induced Protein 1 Overexpression Modulates Transcriptome, Including MicroRNA, in Human Neuroblastoma Cells. (PMID: 26308737) Boratyn E. … Rokita H. (J. Cell. Biochem. 2016) 3 64
  2. Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls. (PMID: 20459774) Witten D. … Lui W.O. (BMC Biol. 2010) 3 64
  3. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64
  4. Identification and classification of conserved RNA secondary structures in the human genome. (PMID: 16628248) Pedersen J.S. … Haussler D. (PLoS Comput. Biol. 2006) 1
  5. RNAdb--a comprehensive mammalian noncoding RNA database. (PMID: 15608161) Pang K.C. … Mattick J.S. (Nucleic Acids Res. 2005) 1

Products for MIR3613 Gene

Sources for MIR3613 Gene

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