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Aliases for MIR3607 Gene

Subcategory (RNA class) for MIR3607 Gene

snoRNA

Quality Score for this RNA gene is

1

Aliases for MIR3607 Gene

  • MicroRNA 3607 3
  • Hsa-Mir-3607 3
  • Mir-3607 3

External Ids for MIR3607 Gene

ORGUL Members for MIR3607 Gene

Previous GeneCards Identifiers for MIR3607 Gene

  • GC05U901503
  • GC05P085917
  • GC05P085919

Summaries for MIR3607 Gene

Entrez Gene Summary for MIR3607 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3607 Gene

MIR3607 (MicroRNA 3607) is an RNA Gene, and is affiliated with the snoRNA class. Among its related pathways are Metabolism and TP53 Regulates Metabolic Genes.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3607 Gene

Genomics for MIR3607 Gene

Regulatory Elements for MIR3607 Gene

Enhancers for MIR3607 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F086617 0.6 ENCODE 0.8 -2.1 -2090 2.4 HDGF ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 SP3 RPL10AP9 MIR3607 PIR49834
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around MIR3607 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3607 Gene

Chromosome:
5
Start:
86,620,497 bp from pter
End:
86,620,575 bp from pter
Size:
79 bases
Orientation:
Plus strand

Genomic View for MIR3607 Gene

Genes around MIR3607 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3607 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3607 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3607 Gene

Proteins for MIR3607 Gene

Post-translational modifications for MIR3607 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3607 Gene

Domains & Families for MIR3607 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3607 Gene

Function for MIR3607 Gene

Animal Model Products

miRNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3607 Gene

Localization for MIR3607 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3607 Gene

Transcripts for MIR3607 Gene

miRNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3607 Gene

No ASD Table

Relevant External Links for MIR3607 Gene

GeneLoc Exon Structure for
MIR3607

No data available for mRNA/cDNA for MIR3607 Gene

Expression for MIR3607 Gene

mRNA expression in normal human tissues for MIR3607 Gene

genes like me logo Genes that share expression patterns with MIR3607: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR3607 Gene

Orthologs for MIR3607 Gene

No data available for Orthologs and Evolution for MIR3607 Gene

Paralogs for MIR3607 Gene

No data available for Paralogs for MIR3607 Gene

Variants for MIR3607 Gene

Sequence variations from dbSNP and Humsavar for MIR3607 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs113415560 -- 86,618,742(+) GGGAG(A/G)CTAAG intron-variant, upstream-variant-2KB
rs113797294 -- 86,620,505(+) GTTGC(A/G)GTGCA intron-variant, nc-transcript-variant
rs114847788 -- 86,619,728(+) ATCTC(A/G)TGTTC intron-variant, upstream-variant-2KB
rs115557677 -- 86,620,074(+) CTAGT(A/G)CTCCT intron-variant, upstream-variant-2KB
rs116683123 -- 86,620,488(+) GCTAC(C/T)AATGC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR3607 Gene

Variant ID Type Subtype PubMed ID
esv3890667 CNV gain 25118596
nsv598839 CNV gain 21841781
nsv830375 CNV gain 17160897

Relevant External Links for MIR3607 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3607

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3607 Gene

Disorders for MIR3607 Gene

Relevant External Links for MIR3607

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3607

No disorders were found for MIR3607 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3607 Gene

Publications for MIR3607 Gene

  1. Regulation of SRC kinases by microRNA-3607 located in a frequently deleted locus in prostate cancer. (PMID: 24817628) Saini S. … Deng G. (Mol. Cancer Ther. 2014) 3 64
  2. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  3. Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls. (PMID: 20459774) Witten D. … Lui W.O. (BMC Biol. 2010) 3 64
  4. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3 64

Products for MIR3607 Gene

Sources for MIR3607 Gene

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