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Aliases for MIR340 Gene

Subcategory (RNA class) for MIR340 Gene

miRNA

Quality Score for this RNA gene is

8

Aliases for MIR340 Gene

  • MicroRNA 340 2 3 5
  • Hsa-Mir-340 3
  • Mir-340 3
  • MIRN340 3

External Ids for MIR340 Gene

Previous HGNC Symbols for MIR340 Gene

  • MIRN340

Previous GeneCards Identifiers for MIR340 Gene

  • GC05M179377
  • GC05M179442

Summaries for MIR340 Gene

Entrez Gene Summary for MIR340 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR340 Gene

MIR340 (MicroRNA 340) is an RNA Gene, and is affiliated with the miRNA class.

fRNAdb sequence ontologies for MIR340 Gene - the ORGUL cluster for this gene includes several descriptions:

  • miRNA: Small, ~22-nt, RNA molecule that is the endogenous transcript of a miRNA gene. Micro RNAs are produced from precursor molecules (SO:0000647) that can form local hairpin structures, which ordinarily are processed (via the Dicer pathway) such that a single miRNA molecule accumulates from one arm of a hairpin precursor molecule. Micro RNAs may trigger the cleavage of their target molecules or act as translational repressors.

  • pre_miRNA: The 60-70 nucleotide region remain after Drosha processing of the primary transcript, that folds back upon itself to form a hairpin sructure.

View fRNAdb secondary structures for MIR340

Additional gene information for MIR340 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MIR340 Gene

Genomics for MIR340 Gene

Regulatory Elements for MIR340 Gene

Enhancers for MIR340 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H180047 1.6 FANTOM5 Ensembl ENCODE dbSUPER 12.1 -33.2 -33248 1.8 HDAC1 FOXA2 TAL1 MAX ZBTB40 TCF12 E2F1 CTBP1 GATA3 NCOR1 RNF130 MIR340 MRNIP TBC1D9B MAML1 LTC4S GC05M180018
GH05H180081 1.7 FANTOM5 Ensembl ENCODE dbSUPER 11 -68.7 -68661 4.3 PKNOX1 FOXA2 SIN3A TCF12 GATA2 ATF7 REST MAFF SMARCA4 MYNN RNF130 MIR340 LTC4S MAML1 LOC646058 ENSG00000278965
GH05H179969 1.2 FANTOM5 Ensembl ENCODE 10.6 +44.0 44044 2.8 ZNF687 POLR2A NBN ZNF18 RNF130 MIR340 TBC1D9B MRNIP MAML1 SQSTM1 RUFY1 HNRNPH1 GC05M179952 PIR35962
GH05H179913 1.1 Ensembl ENCODE 10.4 +101.3 101347 1.7 ELF3 PKNOX1 FOXA2 ZFP64 ARID4B SIN3A ZBTB40 FOS MIXL1 THAP11 MRNIP LOC100996419 MIR340 RNF130 CBY3 RN7SKP150 TBC1D9B GC05M179918
GH05H179967 0.7 ENCODE 10.6 +47.7 47678 0.3 SOX5 SOX13 GATAD2A TFAP4 FOXA2 SAP130 FOXA3 ARID4B MAX FEZF1 MIR340 RNF130 TBC1D9B MRNIP GC05M179954 GC05M179952
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR340 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR340 Gene

Genomic Locations for MIR340 Gene
chr5:180,015,303-180,015,397
(GRCh38/hg38)
Size:
95 bases
Orientation:
Minus strand
chr5:179,442,303-179,442,397
(GRCh37/hg19)

Genomic View for MIR340 Gene

Genes around MIR340 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR340 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR340 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR340 Gene

ORGUL Member Location for MIR340 Gene

ORGUL Member Location for MIR340 gene

Proteins for MIR340 Gene

Post-translational modifications for MIR340 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR340 Gene

Domains & Families for MIR340 Gene

Gene Families for MIR340 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR340: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR340 Gene

Function for MIR340 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR340 Gene

Localization for MIR340 Gene

Gene Ontology (GO) - Cellular Components for MIR340 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IDA 26646931
genes like me logo Genes that share ontologies with MIR340: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for MIR340 Gene

Pathways & Interactions for MIR340 Gene

SuperPathways for MIR340 Gene

No Data Available

Interacting Proteins for MIR340 Gene

Gene Ontology (GO) - Biological Process for MIR340 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR340 Gene

Drugs & Compounds for MIR340 Gene

No Compound Related Data Available

Transcripts for MIR340 Gene

fRNAdb Secondary structures for MIR340 Gene

  • hsa-miR-340-5p_MIMAT0004692_Homo_sapiens_miR-340-5p_mature

mRNA/cDNA for MIR340 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR340 Gene

No ASD Table

Relevant External Links for MIR340 Gene

GeneLoc Exon Structure for
MIR340
ECgene alternative splicing isoforms for
MIR340

Expression for MIR340 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR340 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR340 Gene:

MIR340
genes like me logo Genes that share expression patterns with MIR340: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR340 Gene

Orthologs for MIR340 Gene

This gene was present in the common ancestor of mammals.

Orthologs for MIR340 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ptr-mir-340 34
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia bta-mir-340 34
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Mir340 34
  • 95 (a)
OneToOne
dog
(Canis familiaris)
Mammalia cfa-mir-340 34
  • 91 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia mdo-mir-340 34
  • 59 (a)
OneToOne
Species where no ortholog for MIR340 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR340 Gene

ENSEMBL:
Gene Tree for MIR340 (if available)
TreeFam:
Gene Tree for MIR340 (if available)

Paralogs for MIR340 Gene

No data available for Paralogs for MIR340 Gene

Variants for MIR340 Gene

Sequence variations from dbSNP and Humsavar for MIR340 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1002162417 -- 180,016,382(+) GCCGG(C/T)CAGAG intron-variant, upstream-variant-2KB
rs1003761573 -- 180,016,500(+) CACTG(C/T)TAGTA intron-variant, upstream-variant-2KB
rs1004512788 -- 180,014,843(+) TAGCT(A/T)GGCAT intron-variant, downstream-variant-500B
rs1007576139 -- 180,016,727(+) CCTGA(C/G)AATTT intron-variant, upstream-variant-2KB
rs1007601142 -- 180,016,990(+) AGGTA(A/T)CTGTG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR340 Gene

Variant ID Type Subtype PubMed ID
nsv830561 CNV loss 17160897
nsv1033706 CNV gain 25217958
esv2731314 CNV deletion 23290073
esv2731313 CNV deletion 23290073

Relevant External Links for MIR340 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR340

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR340 Gene

Disorders for MIR340 Gene

Relevant External Links for MIR340

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR340

No disorders were found for MIR340 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR340 Gene

Publications for MIR340 Gene

  1. New human and mouse microRNA genes found by homology search. (PMID: 15634332) Weber MJ (The FEBS journal 2005) 1 3 60
  2. Identification of many microRNAs that copurify with polyribosomes in mammalian neurons. (PMID: 14691248) Kim J … Ruvkun G (Proceedings of the National Academy of Sciences of the United States of America 2004) 1 3 60
  3. miR-340 Inhibits Proliferation and Induces Apoptosis in Gastric Cancer Cell Line SGC-7901, Possibly via the AKT Pathway. (PMID: 28057912) Yu J … Li B (Medical science monitor : international medical journal of experimental and clinical research 2017) 3 60
  4. Association of MicroRNAs and YRNAs With Platelet Function. (PMID: 26646931) Kaudewitz D … Mayr M (Circulation research 2016) 3 60
  5. microRNA-340 Suppresses Tumorigenic Potential of Prostate Cancer Cells by Targeting High-Mobility Group Nucleosome-Binding Domain 5. (PMID: 26394192) Wei P … Sun J (DNA and cell biology 2016) 3 60

Products for MIR340 Gene

Sources for MIR340 Gene

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