Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MIR320C1 Gene

Subcategory (RNA class) for MIR320C1 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR320C1 Gene

  • MicroRNA 320c-1 2 3 5
  • Hsa-Mir-320c-1 3
  • Mir-320c-1 3
  • MIR320C-1 3
  • MIRN320C1 3

External Ids for MIR320C1 Gene

Previous HGNC Symbols for MIR320C1 Gene

  • MIRN320C1

Previous GeneCards Identifiers for MIR320C1 Gene

  • GC00U923008
  • GC18P017520
  • GC18P019264

Summaries for MIR320C1 Gene

Entrez Gene Summary for MIR320C1 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR320C1 Gene

MIR320C1 (MicroRNA 320c-1) is an RNA Gene, and is affiliated with the miRNA class.

Additional gene information for MIR320C1 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR320C1 Gene

Genomics for MIR320C1 Gene

GeneHancer (GH) Regulatory Elements for MIR320C1 Gene

Promoters and enhancers for MIR320C1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH18I021679 Promoter/Enhancer 0.9 Ensembl ENCODE 550.8 -1.7 -1687 3.7 ZNF121 PKNOX1 PRDM6 MIR320C1 MIB1 ABHD3 SNRPD1 ESCO1 ENSG00000265656
GH18I021611 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.6 -70.9 -70863 2.2 HDGF FOXA2 PKNOX1 SMAD1 MLX ZFP64 ARID4B SIN3A FEZF1 DMAP1 SNRPD1 ESCO1 ENSG00000264188 MIR320C1 MIB1 GC18M021596
GH18I021598 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10.5 -82.8 -82767 4.4 CLOCK MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF213 ZNF143 SP3 ESCO1 GC18P021602 MIR320C1 MIB1 ENSG00000199977 ABHD3 SNRPD1 GC18P021594 GC18M021596
GH18I021739 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 11.4 +57.9 57886 3.7 HDGF PKNOX1 ARID4B SIN3A DMAP1 YY1 POLR2B ZNF207 ZNF143 KLF13 MIB1 MIR320C1 ENSG00000200750 RN7SL233P
GH18I021735 Enhancer 1.1 Ensembl ENCODE 11.3 +52.3 52289 1.4 HDGF ATF1 FOXA2 ARNT ZNF48 YY1 NCOA2 TCF12 CBX5 ATF7 MIR320C1 MIB1 MIR133A1HG ENSG00000200750 RN7SL233P
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around MIR320C1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for MIR320C1 Gene

Genomic Locations for MIR320C1 Gene
chr18:21,683,510-21,683,597
(GRCh38/hg38)
Size:
88 bases
Orientation:
Plus strand
chr18:19,263,471-19,263,558
(GRCh37/hg19)

Genomic View for MIR320C1 Gene

Genes around MIR320C1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR320C1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR320C1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR320C1 Gene

Proteins for MIR320C1 Gene

Post-translational modifications for MIR320C1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR320C1 Gene

Domains & Families for MIR320C1 Gene

Gene Families for MIR320C1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR320C1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR320C1 Gene

Function for MIR320C1 Gene

Phenotypes From GWAS Catalog for MIR320C1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR320C1 Gene

Localization for MIR320C1 Gene

Gene Ontology (GO) - Cellular Components for MIR320C1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IDA 26646931
genes like me logo Genes that share ontologies with MIR320C1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for MIR320C1 Gene

Pathways & Interactions for MIR320C1 Gene

SuperPathways for MIR320C1 Gene

No Data Available

Interacting Proteins for MIR320C1 Gene

Gene Ontology (GO) - Biological Process for MIR320C1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for MIR320C1 Gene

Drugs & Compounds for MIR320C1 Gene

No Compound Related Data Available

Transcripts for MIR320C1 Gene

mRNA/cDNA for MIR320C1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR320C1 Gene

No ASD Table

Relevant External Links for MIR320C1 Gene

GeneLoc Exon Structure for
MIR320C1
ECgene alternative splicing isoforms for
MIR320C1

Expression for MIR320C1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR320C1 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR320C1 Gene:

MIR320C1
genes like me logo Genes that share expression patterns with MIR320C1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR320C1 Gene

Orthologs for MIR320C1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR320C1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ptr-mir-320c-1 34
  • 100 (a)
OneToOne
Species where no ortholog for MIR320C1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR320C1 Gene

ENSEMBL:
Gene Tree for MIR320C1 (if available)
TreeFam:
Gene Tree for MIR320C1 (if available)

Paralogs for MIR320C1 Gene

No data available for Paralogs for MIR320C1 Gene

Variants for MIR320C1 Gene

Sequence variations from dbSNP and Humsavar for MIR320C1 Gene

SNP ID Clin Chr 18 pos Variation AA Info Type
rs1000084240 -- 21,683,242(+) C/T upstream_transcript_variant
rs1003551024 -- 21,682,846(+) A/G upstream_transcript_variant
rs1003930023 -- 21,683,797(+) T/A/C downstream_transcript_variant
rs1007520174 -- 21,681,900(+) C/A upstream_transcript_variant
rs1010017919 -- 21,682,879(+) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for MIR320C1 Gene

Variant ID Type Subtype PubMed ID
esv3641939 CNV loss 21293372

Additional Variant Information for MIR320C1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR320C1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR320C1 Gene

Disorders for MIR320C1 Gene

Additional Disease Information for MIR320C1

No disorders were found for MIR320C1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR320C1 Gene

Publications for MIR320C1 Gene

  1. Association of MicroRNAs and YRNAs With Platelet Function. (PMID: 26646931) Kaudewitz D … Mayr M (Circulation research 2016) 3 58
  2. MicroRNA-320c inhibits tumorous behaviors of bladder cancer by targeting Cyclin-dependent kinase 6. (PMID: 25178497) Wang X … Xie L (Journal of experimental & clinical cancer research : CR 2014) 3 58
  3. miR-320c regulates gemcitabine-resistance in pancreatic cancer via SMARCC1. (PMID: 23799850) Iwagami Y … Doki Y (British journal of cancer 2013) 3 58
  4. MicroRNA-199a-3p, microRNA-193b, and microRNA-320c are correlated to aging and regulate human cartilage metabolism. (PMID: 22674437) Ukai T … Mochida J (Journal of orthopaedic research : official publication of the Orthopaedic Research Society 2012) 3 58
  5. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A … Griffiths-Jones S (Nucleic acids research 2011) 3 58

Products for MIR320C1 Gene

Sources for MIR320C1 Gene

Content
Loading form....