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Aliases for MIR320B1 Gene

Subcategory (RNA class) for MIR320B1 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR320B1 Gene

  • MicroRNA 320b-1 2 3
  • Hsa-Mir-320b-1 3
  • MIR320B-1 3
  • MIRN320B1 3

External Ids for MIR320B1 Gene

Previous Symbols for MIR320B1 Gene

  • MIRN320B1

Summaries for MIR320B1 Gene

Entrez Gene Summary for MIR320B1 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR320B1 Gene

MIR320B1 (MicroRNA 320b-1) is a RNA Gene, and belongs to miRNA RNA class.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR320B1 Gene

Genomics for MIR320B1 Gene

Genomic Location for MIR320B1 Gene

Start:
116,671,749 bp from pter
End:
116,671,827 bp from pter
Size:
79 bases
Orientation:
Plus strand

Genomic View for MIR320B1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIR320B1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR320B1 Gene

No data available for Regulatory Elements for MIR320B1 Gene

Proteins for MIR320B1 Gene

Post-translational modifications for MIR320B1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR320B1 Gene

Domains for MIR320B1 Gene

Gene Families for MIR320B1 Gene

HGNC:
  • MIR :ncRNAs / Micro RNAs
genes like me logo Genes that share domains with MIR320B1: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for MIR320B1 Gene

Function for MIR320B1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MIR320B1 Gene

Localization for MIR320B1 Gene

No data available for Gene Ontology (GO) - Cellular Components for MIR320B1 Gene

Pathways for MIR320B1 Gene

SuperPathways for MIR320B1 Gene

No Data Available

Interacting Proteins for MIR320B1 Gene

Gene Ontology (GO) - Biological Process for MIR320B1 Gene

None

No data available for Pathways by source for MIR320B1 Gene

Transcripts for MIR320B1 Gene

mRNA/cDNA for MIR320B1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for MIR320B1 Gene

No ASD Table

Relevant External Links for MIR320B1 Gene

GeneLoc Exon Structure for
MIR320B1
ECgene alternative splicing isoforms for
MIR320B1

Expression for MIR320B1 Gene

No Expression Related Data Available

Orthologs for MIR320B1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for MIR320B1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia ptr-mir-320b-1 37
  • 100 (a)
OneToOne
Species with no ortholog for MIR320B1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for MIR320B1 Gene

ENSEMBL:
Gene Tree for MIR320B1 (if available)
TreeFam:
Gene Tree for MIR320B1 (if available)

Paralogs for MIR320B1 Gene

No data available for Paralogs for MIR320B1 Gene

Variants for MIR320B1 Gene

Sequence variations from dbSNP and Humsavar for MIR320B1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs599563 -- 116,669,972(+) ctgga(A/G)taaga upstream-variant-2KB
rs676886 -- 116,672,106(+) ATTGT(A/T)CTTAA downstream-variant-500B
rs699790 -- 116,670,435(+) AGGTG(C/T)ACCCC upstream-variant-2KB
rs699791 -- 116,670,458(+) AGACT(G/T)TACTT upstream-variant-2KB
rs699792 -- 116,671,274(+) agaga(A/G)agaaa upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for MIR320B1 Gene

Variant ID Type Subtype PubMed ID
nsv831148 CNV Gain 17160897
dgv89e1 CNV Complex 17122850
nsv428190 CNV Gain 18775914

Relevant External Links for MIR320B1 Gene

HapMap Linkage Disequilibrium report
MIR320B1

Disorders for MIR320B1 Gene

No disorders were found for MIR320B1 Gene.

No data available for UniProtKB/Swiss-Prot for MIR320B1 Gene

Publications for MIR320B1 Gene

  1. miRBase: microRNA sequences, targets and gene nomenclature. (PMID: 16381832) Griffiths-Jones S. … Enright A.J. (Nucleic Acids Res. 2006) 3
  2. Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis. (PMID: 16954537) Berezikov E. … Cuppen E. (Genome Res. 2006) 3
  3. Discovering microRNAs from deep sequencing data using miRDeep. (PMID: 18392026) FriedlAonder M.R. … Rajewsky N. (Nat. Biotechnol. 2008) 3
  4. Platelets activated during myocardial infarction release functional miRNA, which can be taken up by endothelial cells and regulate ICAM1 expression. (PMID: 23493781) GidlAPf O. … Erlinge D. (Blood 2013) 3
  5. Circulating MicroRNAs and the occurrence of acute myocardial infarction in Chinese populations. (PMID: 24627568) Huang S. … Wu T. (Circ Cardiovasc Genet 2014) 3

Products for MIR320B1 Gene

Sources for MIR320B1 Gene

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