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Aliases for MIR3200 Gene

Subcategory (RNA class) for MIR3200 Gene

miRNA

Quality Score for this RNA gene is

3

Aliases for MIR3200 Gene

  • MicroRNA 3200 2 3 5
  • Hsa-Mir-3200 3
  • Mir-3200 3

External Ids for MIR3200 Gene

Previous GeneCards Identifiers for MIR3200 Gene

  • GC22U900683
  • GC22P031127

Summaries for MIR3200 Gene

Entrez Gene Summary for MIR3200 Gene

  • microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]

GeneCards Summary for MIR3200 Gene

MIR3200 (MicroRNA 3200) is an RNA Gene, and is affiliated with the miRNA class. Among its related pathways are Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins..

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR3200 Gene

Genomics for MIR3200 Gene

Regulatory Elements for MIR3200 Gene

Enhancers for MIR3200 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22G030716 1.3 FANTOM5 Ensembl ENCODE 0.4 -12.7 -12747 4.2 HDAC1 ESRRA TAL1 JUN ZSCAN4 TCF12 ZNF316 EGR1 NR2F6 FOS OSBP2 SLC35E4 DUSP18 MIR3200
GH22G030763 1.3 Ensembl ENCODE 0.3 +32.3 32289 0.8 PKNOX1 CREB3L1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 DUSP18 MIR3200 LOC105372994
GH22G030733 0.5 ENCODE 0.7 +1.9 1932 0.2 JUND GATA2 JUN FOS SEC14L6 MIR3200 LOC105372994
GH22G030744 0.8 ENCODE 0.4 +12.7 12670 0.5 HDAC1 CTCF ESRRA TAL1 ZIC2 TCF12 GLIS2 POLR2A NCOR1 PATZ1 OSBP2 DUSP18 MIR3200 LOC105372994
GH22G030705 0.9 ENCODE 0.3 -25.2 -25239 1.7 PKNOX1 FOXA2 WRNIP1 ARID4B ZNF48 GLIS2 FOS TBX21 MIER3 SMARCA4 OSBP2 DUSP18 GAL3ST1 SEC14L6 ENSG00000249590 SEC14L2 MIR3200
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR3200 on UCSC Golden Path with GeneCards custom track

Genomic Location for MIR3200 Gene

Chromosome:
22
Start:
30,731,557 bp from pter
End:
30,731,641 bp from pter
Size:
85 bases
Orientation:
Plus strand

Genomic View for MIR3200 Gene

Genes around MIR3200 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR3200 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR3200 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR3200 Gene

Proteins for MIR3200 Gene

Post-translational modifications for MIR3200 Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR3200 Gene

Domains & Families for MIR3200 Gene

Gene Families for MIR3200 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR3200: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR3200 Gene

Function for MIR3200 Gene

Animal Model Products

miRNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR3200 Gene

Localization for MIR3200 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR3200 Gene

Pathways & Interactions for MIR3200 Gene

genes like me logo Genes that share pathways with MIR3200: view

Pathways by source for MIR3200 Gene

1 BioSystems pathway for MIR3200 Gene

Interacting Proteins for MIR3200 Gene

Gene Ontology (GO) - Biological Process for MIR3200 Gene

None

No data available for SIGNOR curated interactions for MIR3200 Gene

Drugs & Compounds for MIR3200 Gene

No Compound Related Data Available

Transcripts for MIR3200 Gene

mRNA/cDNA for MIR3200 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR3200 Gene

No ASD Table

Relevant External Links for MIR3200 Gene

GeneLoc Exon Structure for
MIR3200
ECgene alternative splicing isoforms for
MIR3200

Expression for MIR3200 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for MIR3200 Gene

NURSA nuclear receptor signaling pathways regulating expression of MIR3200 Gene:

MIR3200
genes like me logo Genes that share expression patterns with MIR3200: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for MIR3200 Gene

Orthologs for MIR3200 Gene

Evolution for MIR3200 Gene

ENSEMBL:
Gene Tree for MIR3200 (if available)
TreeFam:
Gene Tree for MIR3200 (if available)

No data available for Orthologs for MIR3200 Gene

Paralogs for MIR3200 Gene

No data available for Paralogs for MIR3200 Gene

Variants for MIR3200 Gene

Sequence variations from dbSNP and Humsavar for MIR3200 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1002640587 -- 30,731,163(+) AGTGA(A/G)ACTCC intron-variant, upstream-variant-2KB
rs1003675562 -- 30,729,816(+) CTGGC(A/G)CACAT intron-variant, upstream-variant-2KB
rs1004186801 -- 30,730,548(+) CCCAC(A/T)GGAAG intron-variant, upstream-variant-2KB
rs1006859958 -- 30,731,920(+) CCAGC(A/G)CTCTG intron-variant, downstream-variant-500B
rs1006925491 -- 30,731,662(+) CTCCT(A/G)CTTCA intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for MIR3200 Gene

Variant ID Type Subtype PubMed ID
nsv1110864 OTHER inversion 24896259

Relevant External Links for MIR3200 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
MIR3200

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR3200 Gene

Disorders for MIR3200 Gene

Relevant External Links for MIR3200

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
MIR3200

No disorders were found for MIR3200 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR3200 Gene

Publications for MIR3200 Gene

  1. miRBase: integrating microRNA annotation and deep-sequencing data. (PMID: 21037258) Kozomara A. … Griffiths-Jones S. (Nucleic Acids Res. 2011) 3 64
  2. Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene. (PMID: 21199797) Persson H. … Rovira C. (Cancer Res. 2011) 3 64
  3. Discovery of novel microRNAs in female reproductive tract using next generation sequencing. (PMID: 20224791) Creighton C.J. … Gunaratne P.H. (PLoS ONE 2010) 3 64
  4. Characterization of the Melanoma miRNAome by Deep Sequencing. (PMID: 20300190) Stark M.S. … Hayward N.K. (PLoS ONE 2010) 3 64
  5. Ultra-high throughput sequencing-based small RNA discovery and discrete statistical biomarker analysis in a collection of cervical tumours and matched controls. (PMID: 20459774) Witten D. … Lui W.O. (BMC Biol. 2010) 3 64

Products for MIR3200 Gene

Sources for MIR3200 Gene

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