Free for academic non-profit institutions. Other users need a Commercial license

Aliases for MIR31HG Gene

Subcategory (RNA class) for MIR31HG Gene


Quality Score for this RNA gene is


Aliases for MIR31HG Gene

  • MIR31 Host Gene 2 3 5
  • MIR31 Host Gene (Non-Protein Coding) 2 3
  • Hsa-Lnc-31 3

External Ids for MIR31HG Gene

Summaries for MIR31HG Gene

GeneCards Summary for MIR31HG Gene

MIR31HG (MIR31 Host Gene) is an RNA Gene, and is affiliated with the miRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for MIR31HG Gene

Genomics for MIR31HG Gene

Regulatory Elements for MIR31HG Gene

Enhancers for MIR31HG Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09F021547 1.2 Ensembl ENCODE 0.8 +4.7 4715 14.6 PKNOX1 SIN3A FEZF1 ZNF2 ZNF121 GLIS2 ZNF302 FOS SP3 CBX8 MIR31 IFNE MIR31HG GC09M021524
GH09F021573 1.5 FANTOM5 Ensembl ENCODE 0.3 -24.2 -24218 20.1 PKNOX1 SIN3A FEZF1 GTF3C2 ZNF121 FOS DEK TSHZ1 MAFF ZNF610 FOCAD MIR31 IFNW1 IFNA1 IFNA6 MIR31HG ENSG00000227443
GH09F021562 0.8 Ensembl ENCODE 0.4 -8.4 -8382 10.9 ZNF335 ZNF664 CHD1 ATF2 TCF7L2 MIR31 IFNA13 MIR31HG ENSG00000227443
GH09F021605 1.2 FANTOM5 Ensembl ENCODE 0.2 -46.1 -46146 1.0 ZNF335 JUND CEBPB STAT3 EP300 ZNF518A MIR31 ENSG00000227443 MIR31HG
GH09F021542 0.7 Ensembl ENCODE 0.3 +16.3 16335 1.5 MAFF TEAD4 MAFK MIR31 IFNE MIR31HG GC09M021524
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around MIR31HG on UCSC Golden Path with GeneCards custom track

Promoters for MIR31HG Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001301363 1997 5800 INSM2 SIN3A ZNF335 GLIS2 CBX8 GLIS1 ZNF341 ZNF524 PRDM1 ZBTB26

Genomic Location for MIR31HG Gene

21,454,268 bp from pter
21,559,698 bp from pter
105,431 bases
Minus strand

Genomic View for MIR31HG Gene

Genes around MIR31HG on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
MIR31HG Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for MIR31HG Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR31HG Gene

Proteins for MIR31HG Gene

Post-translational modifications for MIR31HG Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR31HG Gene

Domains & Families for MIR31HG Gene

Gene Families for MIR31HG Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with MIR31HG: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR31HG Gene

Function for MIR31HG Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for MIR31HG Gene

Localization for MIR31HG Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR31HG Gene

Pathways & Interactions for MIR31HG Gene

SuperPathways for MIR31HG Gene

No Data Available

Interacting Proteins for MIR31HG Gene

Gene Ontology (GO) - Biological Process for MIR31HG Gene


No data available for Pathways by source and SIGNOR curated interactions for MIR31HG Gene

Transcripts for MIR31HG Gene

mRNA/cDNA for MIR31HG Gene

(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MIR31HG Gene

MIR31 host gene (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for MIR31HG Gene

No ASD Table

Relevant External Links for MIR31HG Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for MIR31HG Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for MIR31HG Gene

mRNA differential expression in normal tissues according to GTEx for MIR31HG Gene

This gene is overexpressed in Esophagus - Mucosa (x5.3) and Bladder (x5.1).

NURSA nuclear receptor signaling pathways regulating expression of MIR31HG Gene:


SOURCE GeneReport for Unigene cluster for MIR31HG Gene:

genes like me logo Genes that share expression patterns with MIR31HG: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for MIR31HG Gene

Orthologs for MIR31HG Gene

Evolution for MIR31HG Gene

Gene Tree for MIR31HG (if available)
Gene Tree for MIR31HG (if available)

No data available for Orthologs for MIR31HG Gene

Paralogs for MIR31HG Gene

No data available for Paralogs for MIR31HG Gene

Variants for MIR31HG Gene

Sequence variations from dbSNP and Humsavar for MIR31HG Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs10113937 -- 21,541,803(+) gaggg(A/G)ggagg intron-variant
rs10114744 -- 21,475,629(+) TTTTT(A/T)AAAAA intron-variant
rs10118880 -- 21,559,962(+) ACGGG(A/G)CTGCG upstream-variant-2KB
rs10118924 -- 21,547,134(+) TTTTT(A/G)TAAAG intron-variant
rs10119120 -- 21,540,462(+) AAAAA(G/T)AGCCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MIR31HG Gene

Variant ID Type Subtype PubMed ID
nsv613759 CNV loss 21841781
nsv613758 CNV gain 21841781
nsv525510 CNV gain 19592680
nsv466297 CNV gain 19166990
nsv1115161 CNV deletion 24896259
nsv1115160 CNV deletion 24896259
esv3619965 CNV gain 21293372
esv3619964 CNV loss 21293372
esv3619963 CNV loss 21293372
esv2764150 CNV gain+loss 21179565
esv2759680 CNV loss 17122850
esv2752289 CNV gain 17911159
dgv7475n100 CNV loss 25217958

Relevant External Links for MIR31HG Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for MIR31HG Gene

Disorders for MIR31HG Gene

Relevant External Links for MIR31HG

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for MIR31HG Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for MIR31HG Gene

Publications for MIR31HG Gene

  1. Novel long noncoding RNAs (lncRNAs) in myogenesis: a miR-31 overlapping lncRNA transcript controls myoblast differentiation. (PMID: 25512605) Ballarino M. … Bozzoni I. (Mol. Cell. Biol. 2015) 2 3 64
  2. Long non-coding RNA Loc554202 regulates proliferation and migration in breast cancer cells. (PMID: 24631686) Shi Y. … Wang K. (Biochem. Biophys. Res. Commun. 2014) 2 3 64
  3. miR-31 and its host gene lncRNA LOC554202 are regulated by promoter hypermethylation in triple-negative breast cancer. (PMID: 22289355) Augoff K. … Sossey-Alaoui K. (Mol. Cancer 2012) 2 3 64
  4. A novel class of mammalian-specific tailless retropseudogenes. (PMID: 15364902) Schmitz J. … Brosius J. (Genome Res. 2004) 2 3 64
  5. The lncRNA MIR31HG regulates p16(INK4A) expression to modulate senescence. (PMID: 25908244) Montes M. … Lund A.H. (Nat Commun 2015) 3 64

Products for MIR31HG Gene

Sources for MIR31HG Gene

Loading form....