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Aliases for MIR31HG Gene

Subcategory (RNA class) for MIR31HG Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for MIR31HG Gene

  • MIR31 Host Gene 2 3
  • MIR31 Host Gene (Non-Protein Coding) 2

External Ids for MIR31HG Gene

ORGUL Members for MIR31HG Gene

Summaries for MIR31HG Gene

GeneCards Summary for MIR31HG Gene

MIR31HG (MIR31 Host Gene) is an RNA Gene, and is affiliated with the lncRNA class.

fRNAdb sequence ontologies for MIR31HG Gene - the ORGUL cluster for this gene includes several descriptions:

  • nc_conserved_region: Non-coding region of sequence similarity by descent from a common ancestor.

  • mature_transcript: A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for MIR31HG Gene

Genomics for MIR31HG Gene

Genomic Location for MIR31HG Gene

Start:
21,454,268 bp from pter
End:
21,559,698 bp from pter
Size:
105,431 bases
Orientation:
Minus strand

Genomic View for MIR31HG Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for MIR31HG Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for MIR31HG Gene

No data available for Regulatory Elements for MIR31HG Gene

Proteins for MIR31HG Gene

Post-translational modifications for MIR31HG Gene

No Post-translational modifications

No data available for DME Specific Peptides for MIR31HG Gene

Domains for MIR31HG Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for MIR31HG Gene

Function for MIR31HG Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for MIR31HG Gene

Localization for MIR31HG Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for MIR31HG Gene

Pathways for MIR31HG Gene

SuperPathways for MIR31HG Gene

No Data Available

Interacting Proteins for MIR31HG Gene

Gene Ontology (GO) - Biological Process for MIR31HG Gene

None

No data available for Pathways by source for MIR31HG Gene

Transcripts for MIR31HG Gene

mRNA/cDNA for MIR31HG Gene

(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for MIR31HG Gene

MIR31 host gene (non-protein coding):
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for MIR31HG

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for MIR31HG Gene

No ASD Table

Relevant External Links for MIR31HG Gene

GeneLoc Exon Structure for
MIR31HG
ECgene alternative splicing isoforms for
MIR31HG

Expression for MIR31HG Gene

mRNA expression in normal human tissues for MIR31HG Gene

mRNA differential expression in normal tissues according to GTEx for MIR31HG Gene

This gene is overexpressed in Esophagus - Mucosa (5.3) and Bladder (5.1).

SOURCE GeneReport for Unigene cluster for MIR31HG Gene Hs.458096

genes like me logo Genes that share expressions with MIR31HG: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for MIR31HG Gene

Orthologs for MIR31HG Gene

Evolution for MIR31HG Gene

ENSEMBL:
Gene Tree for MIR31HG (if available)
TreeFam:
Gene Tree for MIR31HG (if available)

No data available for Orthologs for MIR31HG Gene

Paralogs for MIR31HG Gene

No data available for Paralogs for MIR31HG Gene

Variants for MIR31HG Gene

Sequence variations from dbSNP and Humsavar for MIR31HG Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs720974 -- 21,519,905(+) AAAGT(A/C)AGACA intron-variant
rs720975 -- 21,520,275(+) AAGAA(C/T)CTGCA intron-variant
rs725074 -- 21,535,577(+) GGCAA(A/G)TCATC intron-variant
rs991792 -- 21,551,648(-) CAATG(A/G)GGAAA intron-variant
rs991793 -- 21,551,567(-) GAGGA(C/T)AGAAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for MIR31HG Gene

Variant ID Type Subtype PubMed ID
nsv892724 CNV Gain 21882294
esv2752289 CNV Gain 17911159
nsv466297 CNV Gain 19166990
nsv892739 CNV Gain 21882294
nsv892740 CNV Gain 21882294
nsv525510 CNV Gain 19592680
dgv2299e1 CNV Complex 17122850
nsv892741 CNV Gain 21882294

Relevant External Links for MIR31HG Gene

HapMap Linkage Disequilibrium report
MIR31HG

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for MIR31HG Gene

Disorders for MIR31HG Gene

No disorders were found for MIR31HG Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for MIR31HG Gene

Publications for MIR31HG Gene

  1. Long non-coding RNA Loc554202 regulates proliferation and migration in breast cancer cells. (PMID: 24631686) Shi Y. … Wang K. (Biochem. Biophys. Res. Commun. 2014) 2 3
  2. A novel class of mammalian-specific tailless retropseudogenes. (PMID: 15364902) Schmitz J. … Brosius J. (Genome Res. 2004) 2 3
  3. miR-31 and its host gene lncRNA LOC554202 are regulated by promoter hypermethylation in triple-negative breast cancer. (PMID: 22289355) Augoff K. … Sossey-Alaoui K. (Mol. Cancer 2012) 2 3
  4. THOC5: a novel gene involved in HDL-cholesterol metabolism. (PMID: 24023261) Keller M. … Kovacs P. (J. Lipid Res. 2013) 3
  5. Cigarette smoke induces C/EBP-beta-mediated activation of miR-31 in normal human respiratory epithelia and lung cancer cells. (PMID: 21048943) Xi S. … Schrump D.S. (PLoS ONE 2010) 3

Products for MIR31HG Gene

Sources for MIR31HG Gene

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